Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20sambucinum_20[genbank_20GCA_5F001567575.1_202016-02-24]
961 sequences; 37,784,234 total letters
Query= AAMG01002244.1
Length=504
Score E
Sequences producing significant alignments: (Bits) Value
seq368 767 0.0
seq333 756 0.0
seq360 603 3e-170
seq322 493 4e-137
seq94 75.2 3e-11
>seq368
Length=1447
Score = 767 bits (850), Expect = 0.0
Identities = 478/508 (94%), Gaps = 4/508 (1%)
Strand=Plus/Minus
Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60
|||||||||||||||| |||||||||||||||||| ||| ||||||||||||||||||
Sbjct 1188 GTACTCATTCCAATTATAAGACCCAAAAGAGCCCTATATTGTTATTTATTGTCACTACCT 1129
Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1128 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 1069
Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180
|||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct 1068 TCTCAGGCTCCCTCTCCGGAATCGAACCCTTATTCCCCGTTACCCGTTGAAACCATGGTA 1009
Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240
|||| ||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 1008 GGCCTCTATCCTACCATCGAAAGTTGATAGGGCAGATATTTGAATGAAGCATCGCCGGCA 949
Query 241 CAAGGCCATGCGATTCGTTAAGTTATTATGAATCACC-AAGGAGCCCCGAAGGGCGTTGG 299
||||||||||||||||| |||||||||||||||||| ||||||| |||| |||||||
Sbjct 948 CAAGGCCATGCGATTCGAGAAGTTATTATGAATCACCAAAGGAGCGGCGAACCGCGTTGG 889
Query 300 TTTTTTATCTAATAAATACACCCCTTCCGA-AGTCGGGGTTTTTA-GCATGTATTAGCTC 357
|||||||||||||||||||||||||||| | |||||||| ||| | ||||||||||||||
Sbjct 888 TTTTTTATCTAATAAATACACCCCTTCCAAGAGTCGGGGCTTTGATGCATGTATTAGCTC 829
Query 358 TAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAA 417
|||||||||||| ||||||||||||||||| ||| ||||||||||| |||||||||||||
Sbjct 828 TAGAATTACCACAGTTATCCATGTAGTAAGATACCATCAAATAAACTATAACTGATTTAA 769
Query 418 TGAGCCATTCGCAGTTTCACTGTATAGATT-GCTTATACTTAGACATGCATGGCTTAATC 476
|||||||||||||||||||||||||| ||| | |||||||||||||||||||||||||||
Sbjct 768 TGAGCCATTCGCAGTTTCACTGTATAAATTAGTTTATACTTAGACATGCATGGCTTAATC 709
Query 477 TTTGAGACAAGCATATGACTACTGGCAG 504
||||||||||||||||||||||||||||
Sbjct 708 TTTGAGACAAGCATATGACTACTGGCAG 681
>seq333
Length=4014
Score = 756 bits (838), Expect = 0.0
Identities = 471/504 (93%), Gaps = 1/504 (0%)
Strand=Plus/Plus
Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2622 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 2681
Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2682 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTAGTAGCCGTT 2741
Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180
||||||||||| ||||||| |||| |||||| | ||||||||||||| |||||| |
Sbjct 2742 TCTCAGGCTCCTTCTCCGGGGTCGAGCCCTAACCCTCCGTTACCCGTTGCAACCATGTTT 2801
Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240
||||| || || | |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2802 GGCCAATACCCAAACATCGAAAGTTGATAGGGAAGAAATTTGAATGAACCATCGCCGGCA 2861
Query 241 CAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGT 300
||||||||||||||||| |||||| ||||||||||| |||||||||||||| |||||
Sbjct 2862 CAAGGCCATGCGATTCGAGGAGTTATCATGAATCACCAGTGAGCCCCGAAGGGCATTGGT 2921
Query 301 TTTTTATCTAATAAATACACCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCTCTAG 360
|||| |||||||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct 2922 TTTTAATCTAATAAATACATCCCTTCCGAAGTCGGGATTTTTAGCATGTATTAGCTCTAG 2981
Query 361 AATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGA 420
|||||||||||||||||| ||||||||||||||||||||||||||||||| || ||||||
Sbjct 2982 AATTACCACGGTTATCCAAGTAGTAAGGTACTATCAAATAAACGATAACTTATATAATGA 3041
Query 421 GCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTG 480
||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 3042 GCCATTCGCAGTTTCGCTGTATA-ATTGCTTATACTTAGACATGCATGGCTTAATCTTTG 3100
Query 481 AGACAAGCATATGACTACTGGCAG 504
||||||||||||||||||||||||
Sbjct 3101 AGACAAGCATATGACTACTGGCAG 3124
>seq360
Length=1729
Score = 603 bits (668), Expect = 3e-170
Identities = 447/513 (87%), Gaps = 13/513 (3%)
Strand=Plus/Minus
Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60
||||||||||||||||| |||| || | |||||| |||| ||||||||||||||||||
Sbjct 1344 GTACTCATTCCAATTACCAGACTCATA-GAGCCCGGTATTGTTATTTATTGTCACTACCT 1286
Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1285 CCCCGTGTCAGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 1226
Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180
||||||||||||||||||||||||||||||||||| |||| |||||| |||||||||
Sbjct 1225 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCTCCGTCACCCGTCACCACCATGGTA 1166
Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240
||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 1165 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGATGCGTCGCCGGCA 1106
Query 241 C-AAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGC--CCCGAAG----GG 293
| | |||| |||||| ||| |||||| |||||||| | | ||| | | || |
Sbjct 1105 CGATGGCCGTGCGATCCGTCGAGTTATCATGAATCATC--GCAGCAACGGGCAGAGCCCG 1048
Query 294 CGTTGGTTTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATT 352
||| | ||||||||||||||| || ||||||| ||||||||||||| | ||| |||||
Sbjct 1047 CGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACGTATT 988
Query 353 AGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGA 412
|||||||||||||| |||||||||| ||||| || ||| |||||| |||| ||||||||
Sbjct 987 AGCTCTAGAATTACTACGGTTATCCGAGTAGT-AGATACCATCAAACAAACTATAACTGA 929
Query 413 TTTAATGAGCCATTCGCAGTTTCACTGTAT-AGATTGCTTATACTTAGACATGCATGGCT 471
||||||||||||||||||||||||| || | | ||| | ||||||| ||||||||||||
Sbjct 928 TTTAATGAGCCATTCGCAGTTTCACAGTCTGAATTTGTTCATACTTACACATGCATGGCT 869
Query 472 TAATCTTTGAGACAAGCATATGACTACTGGCAG 504
|||||||||||||||||||||||||||||||||
Sbjct 868 TAATCTTTGAGACAAGCATATGACTACTGGCAG 836
>seq322
Length=6685
Score = 493 bits (546), Expect = 4e-137
Identities = 425/516 (82%), Gaps = 20/516 (4%)
Strand=Plus/Plus
Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCT-GTATCAGTATTTATTGTCACTACC 59
|| |||||||||||| | ||| | || ||||| | || |||||||||||||||||
Sbjct 305 GTTCTCATTCCAATTGCCCGACTCGAA-GAGCCAGAGCATTGTTATTTATTGTCACTACC 363
Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119
|||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 364 TCCCTGTGTCAGGATTGGGTAATTTACGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 423
Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGT 179
|||| ||||||||||||||||||| |||||||||||||||||||||||| || |||||||
Sbjct 424 TTCTAAGGCTCCCTCTCCGGAATCAAACCCTAATTCCCCGTTACCCGTTAATGCCATGGT 483
Query 180 AGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGC 239
||||| |||||||||||| |||| |||||||||||||| | | || ||||| ||
Sbjct 484 AGGCCCATATCCTACCATCCAAAGCTGATAGGGCAGAAACTCAATCGATTTATCGC--GC 541
Query 240 TCAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCA-AGGAGC--CCCGAAG--GGC 294
||| ||||| || ||||||||||| ||| || | | | ||||||| ||
Sbjct 542 AAAAG----CGCGATCCGCACAGTTATTATGACTCAACACAATACCAGCCCGAAGACTGC 597
Query 295 GTTGGTTTTTTATCTAATAAATACACCCCTTCCGA-----AGTCGGGGTTTTTAGCATGT 349
|||| ||| ||||||||||| | ||| |||| ||| ||| || ||||||
Sbjct 598 ATTGG-TTTCAATCTAATAAATGCTACCCGCCCGACAAGCAGTTGGGTATTGATGCATGT 656
Query 350 ATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAAC 409
||||||||||||||||| |||| |||||| |||||||||||||||| | || || |||||
Sbjct 657 ATTAGCTCTAGAATTACTACGGGTATCCAAGTAGTAAGGTACTATCGAGTAGACTATAAC 716
Query 410 TGATTTAATGAGCCATTCGCAGTTTCACTGTA-TAGATTGCTTATACTTAGACATGCATG 468
|||| ||||||||||||||||||||||| ||| | |||| |||||||||||||||||||
Sbjct 717 TGATATAATGAGCCATTCGCAGTTTCACAGTACAAAATTGTTTATACTTAGACATGCATG 776
Query 469 GCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504
|||||||||||||||||||| |||||||||||||||
Sbjct 777 GCTTAATCTTTGAGACAAGCGTATGACTACTGGCAG 812
>seq94
Length=145285
Score = 75.2 bits (82), Expect = 3e-11
Identities = 62/75 (83%), Gaps = 2/75 (3%)
Strand=Plus/Plus
Query 183 CCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCA 242
||| || || | |||||||||||||||||| ||||||||||| |||| ||| || || ||
Sbjct 39020 CCAATACCCAAACATCGAAAGTTGATAGGGAAGAAATTTGAACGAACTATCACCAGCGCA 39079
Query 243 AGGCCATGCGATTCG 257
|| | |||||||||
Sbjct 39080 AGAC--TGCGATTCG 39092
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1510385485056
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |