Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sambucinum_20[genbank_20GCA_5F001567575.1_202016-02-24] 961 sequences; 37,784,234 total letters Query= NC_032108.1 Length=589068 Score E Sequences producing significant alignments: (Bits) Value seq30 95.1 5e-14 seq41 91.5 6e-13 >seq30 Length=274085 Score = 95.1 bits (104), Expect = 5e-14 Identities = 211/314 (67%), Gaps = 2/314 (1%) Strand=Plus/Minus Query 12733 AACATCGTAAAAGAAAACTTTCATGCCTAGACACTCTGCTAGGACAGAGACCTGAGAACC 12792 ||| ||||| ||| || ||||| || | | ||| || |||||||| | ||||||||| Sbjct 260377 AACGTCGTAGTAGATGACGTTCATACCCATAGCCTCAGCGAGGACAGACAGCTGAGAACC 260318 Query 12793 AATGTTACCATAACCTACTATACCTAGGGTCTTTCCTCTAACTTCACGGCAACCTTGAGA 12852 ||||| ||| || || || || || || ||||| |||| || || | || || | ||| Sbjct 260317 AATGTGACCGTAGCCGACAATGCCCAGAGTCTTGCCTCGAATCTCCCAGC-ACTTGGAGC 260259 Query 12853 AG-TCTTGTTCCAAATGCCTTGGTGTAGTTCTTTGTTTCTATCTCCAACCTGACGAGAAA 12911 | ||||||||| | || |||| | || ||| || || || | ||||| | || Sbjct 260258 TGACCTTGTTCCAGGTACCACGGTGCATCTCGTTGGATCGGTCGCCGAGTTGACGGGCAA 260199 Query 12912 GATTAATTAGTTGTCCTATGATGAGCTCTGCCACGCTTCTAGTGTTGCAAAAGGGAGAAT 12971 | | || | | | |||| ||||| || || || | | |||| ||||| || | Sbjct 260198 GGGTGATGATCTCGGCAATGACAAGCTCAGCGACACTGCGCGAGTTGGCGAAGGGGGAGT 260139 Query 12972 TAAAGACTGCAATGCCTAGTTTGGTAGCCATGTCTAGATTAACCTGATCGTAACCAATGC 13031 | ||||| || || || |||| || | || || || ||||| | |||||| | Sbjct 260138 TGAAGACGGCGATACCATTCTTGGCGGCAAACTCGAGGTTGACCTGGTTAGTACCAATAC 260079 Query 13032 AGAAGCATCCTATG 13045 ||||||| || ||| Sbjct 260078 AGAAGCAACCGATG 260065 >seq41 Length=230506 Score = 91.5 bits (100), Expect = 6e-13 Identities = 112/152 (74%), Gaps = 2/152 (1%) Strand=Plus/Minus Query 364425 CAATAGTCATACGAGAGGGAATGGAGAGAGGGTTGATGATGATGTCAGGCACCATGCCGT 364484 |||| ||||||||||| ||||||| | ||||||||||||| || ||||| || || | Sbjct 94235 CAATTGTCATACGAGACGGAATGGCGTGAGGGTTGATGATAATATCAGGTGTCAGACCTT 94176 Query 364485 CAGCGGTAAAGGGCATATCTTCGGGAGGAACGATGAGACCAATGGTTCCCTTTTGCGCAT 364544 | | | || |||||||| || | || | | ||| || || |||||||| | | Sbjct 94175 CTCTGCTGAAAGGCATATCCTCCTGTCGATAAGTAACACCGATTGTACCCTTTTGACCGT 94116 Query 364545 AGCGAGAAGCAAACTTGTCGCCAATGACTGGG 364576 ||||||||||||||||| ||||| ||||| Sbjct 94115 GACGAGAAGCAAACTTGTCACCAAT--CTGGG 94086 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1884863191747173