Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20sp._20FSSC_5F6_20[genbank_20GCA_5F001633045.1_202016-04-
27] 103 sequences; 46,940,970 total letters
Query= AAMG01000911.1
Length=280
Score E
Sequences producing significant alignments: (Bits) Value
seq37 163 5e-38
seq41 80.6 4e-13
>seq37
Length=4018383
Score = 163 bits (180), Expect = 5e-38
Identities = 112/124 (90%), Gaps = 2/124 (2%)
Strand=Plus/Plus
Query 107 TCTAAGAAGCCAGCCACCAACCATAGTCGATG-GGGCTATTTAGCAGGTTAAGGTCTCGT 165
|||||||||||||| | ||| || | || |||||||||||||||||||||||||||
Sbjct 3202730 TCTAAGAAGCCAGCGTACTGCCAAAG-CAATACGGGCTATTTAGCAGGTTAAGGTCTCGT 3202788
Query 166 TCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCA 225
||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 3202789 TCGTTATCGCAATTAAGCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCA 3202848
Query 226 CCCA 229
||||
Sbjct 3202849 CCCA 3202852
>seq41
Length=1307349
Score = 80.6 bits (88), Expect = 4e-13
Identities = 98/130 (75%), Gaps = 9/130 (7%)
Strand=Plus/Minus
Query 136 ATGGGGCTATTTAGCAGGTTAAGGT----CTCGTTCGTTATCGGAATTAACCAGACAAAT 191
|| |||||||| |||||||| |||| || |||||||||| ||| || | | ||||
Sbjct 718807 ATCGGGCTATTCAGCAGGTTTAGGTAGGTCTAGTTCGTTATCCCAATCAAGCGTATAAAT 718748
Query 192 CACTCCACCAACTAAGAACGGCCAT---GCACCAC-CACCCATAGAATC-AAGAAAGAGC 246
||||||||| |||| ||||||| || |||||| ||| | ||| | |||| ||||
Sbjct 718747 CACTCCACCGACTAGGAACGGCTATATGCCACCACGCACGAAACGAAACTCAGAAGGAGC 718688
Query 247 TATCAATCTG 256
| ||||||||
Sbjct 718687 TCTCAATCTG 718678
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 796799204943
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |