Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20sp._20JS626_20[genbank_20GCA_5F000966865.1_202015-03-31]
63 sequences; 42,866,936 total letters
Query= AAMG01002244.1
Length=504
Score E
Sequences producing significant alignments: (Bits) Value
seq54 470 4e-130
seq21 78.8 3e-12
>seq54
Length=1180
Score = 470 bits (520), Expect = 4e-130
Identities = 325/366 (89%), Gaps = 18/366 (5%)
Strand=Plus/Plus
Query 112 GTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGAT 171
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 829 GTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTTATTCCCCGTTACCCGTTGAA 888
Query 172 ACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCA 231
||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 889 ACCATGGTAGGCCTCTATCCTACCATCGAAAGTTGATAGGGCAGATATTTGAATGAAGCA 948
Query 232 TCGCCGGCTCAAGGCCATGCGATTCGTTAAGTTATTATGAATCACC-AAGGAGCCCCGAA 290
|||||||| ||||||||||||||||| |||||||||||||||||| ||||||| ||||
Sbjct 949 TCGCCGGCACAAGGCCATGCGATTCGAGAAGTTATTATGAATCACCAAAGGAGCGGCGAA 1008
Query 291 GGGCGTTGGTTTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGG-TTTTTAGCATG 348
|||||||||||||||||||||||||||||||| || |||||||||| || | |||||
Sbjct 1009 CCGCGTTGGTTTTTTATCTAATAAATACACCCCTCCCAGAAGTCGGGGCTTGATTGCATG 1068
Query 349 TATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAA 408
||||||||||| |||||||||| ||||||| ||||||||||| ||||
Sbjct 1069 TATTAGCTCTA--------------ATCCATGTAGCAAGGTACCATCAAATAAACTATAA 1114
Query 409 CTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGA-TTGCTTATACTTAGACATGCAT 467
||||||||||||||||||||||||||||| ||| | | ||| ||||||||||||||||||
Sbjct 1115 CTGATTTAATGAGCCATTCGCAGTTTCACAGTACAAACTTGTTTATACTTAGACATGCAT 1174
Query 468 GGCTTA 473
||||||
Sbjct 1175 GGCTTA 1180
>seq21
Length=326613
Score = 78.8 bits (86), Expect = 3e-12
Identities = 61/73 (84%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 253 ATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGTTTTTTATCTAAT 312
||||| |||||| ||||| |||| | ||||||||||| ||||||||| |||||||
Sbjct 255973 ATTCGAGGAGTTATCATGAAATACCAGTAAACCCCGAAGGGCATTGGTTTTTAATCTAAT 255914
Query 313 AAATACACCCCTT 325
|||||||||||||
Sbjct 255913 AAATACACCCCTT 255901
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1510399048448
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |