Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20NRRL_2054464_20[genbank_20GCA_5F001654545.1_202016- 06-02] 1,842 sequences; 41,955,053 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq199 607 2e-171 seq1111 95.1 4e-17 >seq199 Length=7895 Score = 607 bits (672), Expect = 2e-171 Identities = 389/423 (92%), Gaps = 1/423 (0%) Strand=Plus/Minus Query 82 TTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAA 141 ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| Sbjct 7895 TTTGCGCGCCTGCTGCCTTCCTTGGATGTAGTAGCCGTTTCTCAGGCTCCTTCTCCGGGG 7836 Query 142 TCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAA 201 |||| |||||| | ||||||||||||| |||||| | ||||| || || | ||||||| Sbjct 7835 TCGAGCCCTAACCCTCCGTTACCCGTTGCAACCATGTTTGGCCAATACCCAAACATCGAA 7776 Query 202 AGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCAAGGCCATGCGATTCGTTAA 261 ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| | Sbjct 7775 AGTTGATAGGGAAGAAATTTGAATGAACCATCGCCGGCACAAGGCCATGCGATTCGAGGA 7716 Query 262 GTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGTTTTTTATCTAATAAATACACC 321 ||||| ||||||||||| |||||||||||||| ||||||||| |||||||||||||| | Sbjct 7715 GTTATCATGAATCACCAGTGAGCCCCGAAGGGCATTGGTTTTTAATCTAATAAATACATC 7656 Query 322 CCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGT 381 ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || Sbjct 7655 CCTTCCGAAGTCGGGATTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCAAGT 7596 Query 382 AGTAAGGTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTA 441 ||||||||||||||||||||||||||||| || ||||||||||||||||||||| | ||| Sbjct 7595 AGTAAGGTACTATCAAATAAACGATAACTTATATAATGAGCCATTCGCAGTTTCGCGGTA 7536 Query 442 TAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGG 501 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 7535 TA-ATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGG 7477 Query 502 CAG 504 ||| Sbjct 7476 CAG 7474 Score = 147 bits (162), Expect = 7e-33 Identities = 81/81 (100%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 81 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 22 Query 61 CCCCGTGTCGGGATTGGGTAA 81 ||||||||||||||||||||| Sbjct 21 CCCCGTGTCGGGATTGGGTAA 1 >seq1111 Length=5073 Score = 95.1 bits (104), Expect = 4e-17 Identities = 52/52 (100%), Gaps = 0/52 (0%) Strand=Plus/Plus Query 453 TACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 TACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 52 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510372178432