Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20temperatum_20[genbank_20GCA_5F001513835.1_202016-01-13]
43 sequences; 45,458,781 total letters
Query= AAMG01000185.1
Length=266
Score E
Sequences producing significant alignments: (Bits) Value
seq18 279 8e-73
seq12 181 2e-43
seq42 95.1 2e-17
>seq18
Length=9433
Score = 279 bits (308), Expect = 8e-73
Identities = 202/229 (88%), Gaps = 5/229 (2%)
Strand=Plus/Plus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
|||||||||||||||||||| ||||||| |||| ||||||| |||||||||||| ||| |
Sbjct 5329 GTACAAAGGGCAGGGACGTAATCAACGCAAGCT-GATGACTTGCGCTTACTAGGGATT-C 5386
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119
||||||||||| ||| |||||||||| |||||||||| ||||| | | ||| | ||||||
Sbjct 5387 CTCGTTGAAGAGCAATAATTGCAATGCTCTATCCCCAGCACGACGGAGTTTAACAAGATT 5446
Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179
|||||||||| |||| ||||| || |||| || | | |||||||||||||||||||
Sbjct 5447 ACCCGGACCTTTCGGACAAGGAAGTA--CTCGCTGGCTCCGTCAGTGTAGCGCGCGTGCG 5504
Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 5505 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 5553
>seq12
Length=5052385
Score = 181 bits (200), Expect = 2e-43
Identities = 180/228 (79%), Gaps = 5/228 (2%)
Strand=Plus/Minus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
||| |||||||||||||||| | ||| |||| || ||| |||||||||||| ||| |
Sbjct 2745103 GTATAAAGGGCAGGGACGTAATTAACCTAAGCTA-ATAACTTGCGCTTACTAGGGATT-C 2745046
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119
|||||| |||| || |||| ||||| |||||||||| ||||| | | ||| | ||||||
Sbjct 2745045 CTCGTTAAAGAGTAATAATTACAATGCTCTATCCCCAGCACGACGGAGTTTAATAAGATT 2744986
Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179
||| |||||| | | |||| || || | | | | |||||||||||||||||
Sbjct 2744985 ACCTGGACCTTTTAGATAAGGAAGTA--CTTGCTAGCTCTGTTAGTGTAGCGCGCGTGCG 2744928
Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTC 227
|||||||| |||||||||||| |||||||||||||| ||| |||||||
Sbjct 2744927 GCCCAGAATATCTAAGGGCATTACAGACCTGTTATTACCTTAAACTTC 2744880
Score = 104 bits (114), Expect = 4e-20
Identities = 79/92 (86%), Gaps = 1/92 (1%)
Strand=Plus/Minus
Query 147 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 206
||||| || | | ||||||||||| | ||||| ||||||||||||||||||| |||| |
Sbjct 4882948 ACTCGCTGGCTGCGTCAGTGTAGCGTGTGTGCGACCCAGAACATCTAAGGGCAGCACACA 4882889
Query 207 CCTGTTATTGCCTCAAACTTCCGT-GGCCTAA 237
|||||||||||||||||||||| | ||| |||
Sbjct 4882888 CCTGTTATTGCCTCAAACTTCCATCGGCTTAA 4882857
>seq42
Length=2624843
Score = 95.1 bits (104), Expect = 2e-17
Identities = 113/151 (75%), Gaps = 3/151 (2%)
Strand=Plus/Minus
Query 83 AATGATCTATCCCCATCACGATGAAATTTCA-AAGATTACCCGGACCTGTCGGCCAAGGT 141
|||| ||| |||| |||||| | ||| | |||| ||||||||||| |||| ||||
Sbjct 2011695 AATGCTCTGTCCCACGGACGATGGAGTTTAACAAGAATACCCGGACCTTTCGGGCAAG-- 2011638
Query 142 GATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATC 201
|| | |||| || | ||||||||| |||| ||||| | |||| | ||||| |||||
Sbjct 2011637 GAAATACTCACTGGCTCCATCAGTGTCACGCGAGTGCGATCAAGAAGACCTAAGAGCATC 2011578
Query 202 ACAGACCTGTTATTGCCTCAAACTTCCGTGG 232
||||||||| ||||| ||||| |||||
Sbjct 2011577 CCAGACCTGTATTTGCCCCAAACCGGCGTGG 2011547
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 751999686745
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |