Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20temperatum_20[genbank_20GCA_5F001513835.1_202016-01-13] 43 sequences; 45,458,781 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq18 279 8e-73 seq12 181 2e-43 seq42 95.1 2e-17 >seq18 Length=9433 Score = 279 bits (308), Expect = 8e-73 Identities = 202/229 (88%), Gaps = 5/229 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||| |||| ||||||| |||||||||||| ||| | Sbjct 5329 GTACAAAGGGCAGGGACGTAATCAACGCAAGCT-GATGACTTGCGCTTACTAGGGATT-C 5386 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119 ||||||||||| ||| |||||||||| |||||||||| ||||| | | ||| | |||||| Sbjct 5387 CTCGTTGAAGAGCAATAATTGCAATGCTCTATCCCCAGCACGACGGAGTTTAACAAGATT 5446 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||||||||| |||| ||||| || |||| || | | ||||||||||||||||||| Sbjct 5447 ACCCGGACCTTTCGGACAAGGAAGTA--CTCGCTGGCTCCGTCAGTGTAGCGCGCGTGCG 5504 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 5505 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 5553 >seq12 Length=5052385 Score = 181 bits (200), Expect = 2e-43 Identities = 180/228 (79%), Gaps = 5/228 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||| |||||||||||||||| | ||| |||| || ||| |||||||||||| ||| | Sbjct 2745103 GTATAAAGGGCAGGGACGTAATTAACCTAAGCTA-ATAACTTGCGCTTACTAGGGATT-C 2745046 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119 |||||| |||| || |||| ||||| |||||||||| ||||| | | ||| | |||||| Sbjct 2745045 CTCGTTAAAGAGTAATAATTACAATGCTCTATCCCCAGCACGACGGAGTTTAATAAGATT 2744986 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||| |||||| | | |||| || || | | | | ||||||||||||||||| Sbjct 2744985 ACCTGGACCTTTTAGATAAGGAAGTA--CTTGCTAGCTCTGTTAGTGTAGCGCGCGTGCG 2744928 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTC 227 |||||||| |||||||||||| |||||||||||||| ||| ||||||| Sbjct 2744927 GCCCAGAATATCTAAGGGCATTACAGACCTGTTATTACCTTAAACTTC 2744880 Score = 104 bits (114), Expect = 4e-20 Identities = 79/92 (86%), Gaps = 1/92 (1%) Strand=Plus/Minus Query 147 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 206 ||||| || | | ||||||||||| | ||||| ||||||||||||||||||| |||| | Sbjct 4882948 ACTCGCTGGCTGCGTCAGTGTAGCGTGTGTGCGACCCAGAACATCTAAGGGCAGCACACA 4882889 Query 207 CCTGTTATTGCCTCAAACTTCCGT-GGCCTAA 237 |||||||||||||||||||||| | ||| ||| Sbjct 4882888 CCTGTTATTGCCTCAAACTTCCATCGGCTTAA 4882857 >seq42 Length=2624843 Score = 95.1 bits (104), Expect = 2e-17 Identities = 113/151 (75%), Gaps = 3/151 (2%) Strand=Plus/Minus Query 83 AATGATCTATCCCCATCACGATGAAATTTCA-AAGATTACCCGGACCTGTCGGCCAAGGT 141 |||| ||| |||| |||||| | ||| | |||| ||||||||||| |||| |||| Sbjct 2011695 AATGCTCTGTCCCACGGACGATGGAGTTTAACAAGAATACCCGGACCTTTCGGGCAAG-- 2011638 Query 142 GATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATC 201 || | |||| || | ||||||||| |||| ||||| | |||| | ||||| ||||| Sbjct 2011637 GAAATACTCACTGGCTCCATCAGTGTCACGCGAGTGCGATCAAGAAGACCTAAGAGCATC 2011578 Query 202 ACAGACCTGTTATTGCCTCAAACTTCCGTGG 232 ||||||||| ||||| ||||| ||||| Sbjct 2011577 CCAGACCTGTATTTGCCCCAAACCGGCGTGG 2011547 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751999686745