Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20temperatum_20[genbank_20GCA_5F001513835.1_202016-01-13]
43 sequences; 45,458,781 total letters
Query= AAMG01002186.1
Length=328
Score E
Sequences producing significant alignments: (Bits) Value
seq18 443 4e-122
seq12 320 3e-85
seq42 116 7e-24
seq1 77.0 6e-12
>seq18
Length=9433
Score = 443 bits (490), Expect = 4e-122
Identities = 284/309 (92%), Gaps = 2/309 (1%)
Strand=Plus/Minus
Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 79
|| ||||||||||||||||||||||||| | |||||||| | ||| ||||||||||
Sbjct 5636 GAACGAGACCTTAACCTGCTAAATAGCCCGTATTGCTTTGGCAGTACGCTGGCTTCTTAG 5577
Query 80 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTA 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 5576 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTA 5517
Query 140 GATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCG 199
|||||||||||||||||||||||||||||||| |||||| ||||| | | ||||| |||
Sbjct 5516 GATGTTCTGGGCCGCACGCGCGCTACACTGACGGAGCCAGCGAGTACTT--CCTTGTCCG 5459
Query 200 GAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTG 259
|||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 5458 AAAGGTCCGGGTAATCTTGTTAAACTCCGTCGTGCTGGGGATAGAGCATTGCAATTATTG 5399
Query 260 CTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTG 319
|||||||||||||||| |||||||||||| ||||||||| ||||||||||||||||||
Sbjct 5398 CTCTTCAACGAGGAATCCCTAGTAAGCGCAAGTCATCAGCTTGCGTTGATTACGTCCCTG 5339
Query 320 CCCTTTGTA 328
|||||||||
Sbjct 5338 CCCTTTGTA 5330
>seq12
Length=5052385
Score = 320 bits (354), Expect = 3e-85
Identities = 254/304 (84%), Gaps = 2/304 (1%)
Strand=Plus/Plus
Query 25 AGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAGAGGGA 84
||||||||||||||||||||||| | ||||| || | ||| |||||||||||||||
Sbjct 2744801 AGACCTTAACCTGCTAAATAGCCTGTATTGCTTTAGCAGTACGCTGGCTTCTTAGAGGGA 2744860
Query 85 CTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGT 144
|||| ||| ||||| || ||||||| ||| |||||||||||||| |||||||||||| |
Sbjct 2744861 CTATTAGCTTAAGCCAATAGAAGTTTAAGGTAATAACAGGTCTGTAATGCCCTTAGATAT 2744920
Query 145 TCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGG 204
|||||||||||||||||||||||| ||||||| | | ||| | | |||| | ||||
Sbjct 2744921 TCTGGGCCGCACGCGCGCTACACTAACAGAGCTAGCAAGTACTT--CCTTATCTAAAAGG 2744978
Query 205 TCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTT 264
|| ||||||||| |||||||| ||||||||||||||||||||||| ||||||| |||||
Sbjct 2744979 TCCAGGTAATCTTATTAAACTCCGTCGTGCTGGGGATAGAGCATTGTAATTATTACTCTT 2745038
Query 265 CAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTT 324
|||||||||| |||||||||||| || || ||| ||| |||||||||||||||||
Sbjct 2745039 TAACGAGGAATCCCTAGTAAGCGCAAGTTATTAGCTTAGGTTAATTACGTCCCTGCCCTT 2745098
Query 325 TGTA 328
| ||
Sbjct 2745099 TATA 2745102
Score = 154 bits (170), Expect = 3e-35
Identities = 103/115 (90%), Gaps = 0/115 (0%)
Strand=Plus/Plus
Query 70 GGCTTCTTAGAGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129
|| ||||| ||||| ||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 4882834 GGTTTCTTTGAGGGGCTATCGGCTTAAGCCGATGGAAGTTTGAGGCAATAACAGGTGTGT 4882893
Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGT 184
| ||||||||||||||||||| ||||| | |||||||||||| ||||| |||||
Sbjct 4882894 GCTGCCCTTAGATGTTCTGGGTCGCACACACGCTACACTGACGCAGCCAGCGAGT 4882948
>seq42
Length=2624843
Score = 116 bits (128), Expect = 7e-24
Identities = 112/143 (78%), Gaps = 2/143 (1%)
Strand=Plus/Plus
Query 107 GTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACA 166
||||| ||||| ||||||||| ||||| ||||| | |||| | ||||| |||| |||
Sbjct 2011555 GTTTGGGGCAAATACAGGTCTGGGATGCTCTTAGGTCTTCTTGATCGCACTCGCGTGACA 2011614
Query 167 CTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTC 226
|||| |||||| |||| || ||||| ||| |||||| ||||| |||||||||||||
Sbjct 2011615 CTGATGGAGCCAGTGAGT--ATTTCCTTGCCCGAAAGGTCCGGGTATTCTTGTTAAACTC 2011672
Query 227 TGTCGTGCTGGGGATAGAGCATT 249
|||| | |||| ||||||||
Sbjct 2011673 CATCGTCCGTGGGACAGAGCATT 2011695
>seq1
Length=5220104
Score = 77.0 bits (84), Expect = 6e-12
Identities = 57/67 (85%), Gaps = 0/67 (0%)
Strand=Plus/Plus
Query 260 CTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTG 319
|||||||||||||||| | ||||||| | ||| | ||| ||||||||||||||||||
Sbjct 3428837 CTCTTCAACGAGGAATCCGTAGTAAGAGTAAGTCGTAAGCTTGCGTTGATTACGTCCCTG 3428896
Query 320 CCCTTTG 326
|||||||
Sbjct 3428897 CCCTTTG 3428903
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 947199592704
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |