Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20temperatum_20[genbank_20GCA_5F001513835.1_202016-01-13] 43 sequences; 45,458,781 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq18 443 4e-122 seq12 320 3e-85 seq42 116 7e-24 seq1 77.0 6e-12 >seq18 Length=9433 Score = 443 bits (490), Expect = 4e-122 Identities = 284/309 (92%), Gaps = 2/309 (1%) Strand=Plus/Minus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 79 || ||||||||||||||||||||||||| | |||||||| | ||| |||||||||| Sbjct 5636 GAACGAGACCTTAACCTGCTAAATAGCCCGTATTGCTTTGGCAGTACGCTGGCTTCTTAG 5577 Query 80 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTA 139 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 5576 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTA 5517 Query 140 GATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCG 199 |||||||||||||||||||||||||||||||| |||||| ||||| | | ||||| ||| Sbjct 5516 GATGTTCTGGGCCGCACGCGCGCTACACTGACGGAGCCAGCGAGTACTT--CCTTGTCCG 5459 Query 200 GAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTG 259 |||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 5458 AAAGGTCCGGGTAATCTTGTTAAACTCCGTCGTGCTGGGGATAGAGCATTGCAATTATTG 5399 Query 260 CTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTG 319 |||||||||||||||| |||||||||||| ||||||||| |||||||||||||||||| Sbjct 5398 CTCTTCAACGAGGAATCCCTAGTAAGCGCAAGTCATCAGCTTGCGTTGATTACGTCCCTG 5339 Query 320 CCCTTTGTA 328 ||||||||| Sbjct 5338 CCCTTTGTA 5330 >seq12 Length=5052385 Score = 320 bits (354), Expect = 3e-85 Identities = 254/304 (84%), Gaps = 2/304 (1%) Strand=Plus/Plus Query 25 AGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAGAGGGA 84 ||||||||||||||||||||||| | ||||| || | ||| ||||||||||||||| Sbjct 2744801 AGACCTTAACCTGCTAAATAGCCTGTATTGCTTTAGCAGTACGCTGGCTTCTTAGAGGGA 2744860 Query 85 CTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGT 144 |||| ||| ||||| || ||||||| ||| |||||||||||||| |||||||||||| | Sbjct 2744861 CTATTAGCTTAAGCCAATAGAAGTTTAAGGTAATAACAGGTCTGTAATGCCCTTAGATAT 2744920 Query 145 TCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGG 204 |||||||||||||||||||||||| ||||||| | | ||| | | |||| | |||| Sbjct 2744921 TCTGGGCCGCACGCGCGCTACACTAACAGAGCTAGCAAGTACTT--CCTTATCTAAAAGG 2744978 Query 205 TCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTT 264 || ||||||||| |||||||| ||||||||||||||||||||||| ||||||| ||||| Sbjct 2744979 TCCAGGTAATCTTATTAAACTCCGTCGTGCTGGGGATAGAGCATTGTAATTATTACTCTT 2745038 Query 265 CAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTT 324 |||||||||| |||||||||||| || || ||| ||| ||||||||||||||||| Sbjct 2745039 TAACGAGGAATCCCTAGTAAGCGCAAGTTATTAGCTTAGGTTAATTACGTCCCTGCCCTT 2745098 Query 325 TGTA 328 | || Sbjct 2745099 TATA 2745102 Score = 154 bits (170), Expect = 3e-35 Identities = 103/115 (90%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 70 GGCTTCTTAGAGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129 || ||||| ||||| ||||||||| ||||||||||||||||||||||||||||||| ||| Sbjct 4882834 GGTTTCTTTGAGGGGCTATCGGCTTAAGCCGATGGAAGTTTGAGGCAATAACAGGTGTGT 4882893 Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGT 184 | ||||||||||||||||||| ||||| | |||||||||||| ||||| ||||| Sbjct 4882894 GCTGCCCTTAGATGTTCTGGGTCGCACACACGCTACACTGACGCAGCCAGCGAGT 4882948 >seq42 Length=2624843 Score = 116 bits (128), Expect = 7e-24 Identities = 112/143 (78%), Gaps = 2/143 (1%) Strand=Plus/Plus Query 107 GTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACA 166 ||||| ||||| ||||||||| ||||| ||||| | |||| | ||||| |||| ||| Sbjct 2011555 GTTTGGGGCAAATACAGGTCTGGGATGCTCTTAGGTCTTCTTGATCGCACTCGCGTGACA 2011614 Query 167 CTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTC 226 |||| |||||| |||| || ||||| ||| |||||| ||||| ||||||||||||| Sbjct 2011615 CTGATGGAGCCAGTGAGT--ATTTCCTTGCCCGAAAGGTCCGGGTATTCTTGTTAAACTC 2011672 Query 227 TGTCGTGCTGGGGATAGAGCATT 249 |||| | |||| |||||||| Sbjct 2011673 CATCGTCCGTGGGACAGAGCATT 2011695 >seq1 Length=5220104 Score = 77.0 bits (84), Expect = 6e-12 Identities = 57/67 (85%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 260 CTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTG 319 |||||||||||||||| | ||||||| | ||| | ||| |||||||||||||||||| Sbjct 3428837 CTCTTCAACGAGGAATCCGTAGTAAGAGTAAGTCGTAAGCTTGCGTTGATTACGTCCCTG 3428896 Query 320 CCCTTTG 326 ||||||| Sbjct 3428897 CCCTTTG 3428903 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947199592704