Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20udum_20[genbank_20GCA_5F002194535.1_202017-06-15] 712 sequences; 56,380,608 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq692 279 8e-73 seq112 105 1e-20 seq702 104 4e-20 >seq692 Length=8001 Score = 279 bits (308), Expect = 8e-73 Identities = 202/229 (88%), Gaps = 5/229 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||| |||| ||||||| |||||||||||| ||| | Sbjct 4062 GTACAAAGGGCAGGGACGTAATCAACGCAAGCT-GATGACTTGCGCTTACTAGGGATT-C 4119 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119 ||||||||||| ||| |||||||||| |||||||||| ||||| | | ||| | |||||| Sbjct 4120 CTCGTTGAAGAGCAATAATTGCAATGCTCTATCCCCAGCACGACGGAGTTTAACAAGATT 4179 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||||||||| |||| ||||| || |||| || | | ||||||||||||||||||| Sbjct 4180 ACCCGGACCTTTCGGACAAGGAAGTA--CTCGCTGGCTCCGTCAGTGTAGCGCGCGTGCG 4237 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4238 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 4286 >seq112 Length=5402168 Score = 105 bits (116), Expect = 1e-20 Identities = 63/66 (95%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 161 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 220 |||| |||||||||||| |||||||||||||||||||||||||||||||||||||| ||| Sbjct 5180169 TCAGCGTAGCGCGCGTGTGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGTCTC 5180110 Query 221 AAACTT 226 |||||| Sbjct 5180109 AAACTT 5180104 >seq702 Length=2747775 Score = 104 bits (114), Expect = 4e-20 Identities = 110/143 (77%), Gaps = 3/143 (2%) Strand=Plus/Minus Query 83 AATGATCTATCCCCATCACGATGAAATTTCA-AAGATTACCCGGACCTGTCGGCCAAGGT 141 |||| |||||||| | |||| | ||| | ||||||||||| |||| |||| ||||| Sbjct 2127758 AATGCTCTATCCCAAGGACGACAGAGTTTAACAAGATTACCCGAACCTTTCGGGCAAGGA 2127699 Query 142 GATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATC 201 |||| ||| || | ||||||||| |||||||||| | |||| |||||| ||| || Sbjct 2127698 AATAG--TCGCTGGCTCCATCAGTGTCACGCGCGTGCGATCAAGAATATCTAAAGGCGTC 2127641 Query 202 ACAGACCTGTTATTGCCTCAAAC 224 ||||||||| ||||| ||||| Sbjct 2127640 CCAGACCTGTATTTGCCCCAAAC 2127618 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751994813080