Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20virguliforme_20[genbank_20GCA_5F001680525.1_202016-07-06] 20,982 sequences; 49,446,642 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq3 367 2e-99 seq18908 307 2e-81 seq11336 251 1e-64 seq11396 138 2e-30 >seq3 Length=4379 Score = 367 bits (406), Expect = 2e-99 Identities = 239/259 (92%), Gaps = 3/259 (1%) Strand=Plus/Plus Query 1 TACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 60 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2796 TACTCGCTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 2855 Query 61 ACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC 120 ||||||||||||||||||||||||| |||| || ||| |||||||||||||||||||||| Sbjct 2856 ACCTGTTATTGCCTCAAACTTCCATCGGCTTGA-GCCGATAGTCCCTCTAAGAAGCCAGC 2914 Query 121 CACCAACCATAGTCGATG-GGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATT 179 | ||| || | || |||||||||||||||||||||||||||||||||||| |||| Sbjct 2915 GTACTGCCAAAG-CAATACGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGCAATT 2973 Query 180 AACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 239 || ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| Sbjct 2974 AAGCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCACAAAATCAAG 3033 Query 240 AAAGAGCTATCAATCTGTC 258 |||||||| |||||||||| Sbjct 3034 AAAGAGCTCTCAATCTGTC 3052 >seq18908 Length=311 Score = 307 bits (340), Expect = 2e-81 Identities = 225/258 (87%), Gaps = 4/258 (2%) Strand=Plus/Plus Query 3 CTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGAC 62 |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 22 CTCGTTGGTCGCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGAC 81 Query 63 CTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC-C 121 ||||||| |||||| ||||||||||||| | ||||||||||||||||||||| | || | Sbjct 82 CTGTTATCGCCTCATACTTCCATTGGCTAAACGCCAATAGTCCCTCTAAGAAGTCGGCGC 141 Query 122 ACCAACCATAGTCGATG-GGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTA 180 ||| || ||||| | |||||||||||| | ||||||||||||||| |||||| | Sbjct 142 ACC--GCAGGTGCGATGCTGACTATTTAGCAGGCTGAGGTCTCGTTCGTTACCGGAATCA 199 Query 181 ACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGA 240 ||| ||||| || |||||||||||||||||||||||||||||||||| |||||||||| Sbjct 200 ACCTGACAAGGCAACCCACCAACTAAGAACGGCCATGCACCACCACCCACAGAATCAAGA 259 Query 241 AAGAGCTATCAATCTGTC 258 ||||||| |||||||||| Sbjct 260 AAGAGCTCTCAATCTGTC 277 >seq11336 Length=423 Score = 251 bits (278), Expect = 1e-64 Identities = 194/228 (85%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 3 CTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGAC 62 |||| || | | ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 193 CTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGAC 252 Query 63 CTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCA 122 ||||||||||||||||||||| | || ||| | ||||||||||||||||| ||| Sbjct 253 CTGTTATTGCCTCAAACTTCCGCGGCCTAAAAGGCCGTAGTCCCTCTAAGAAGCTGGCCG 312 Query 123 CCAA-CCATA-GTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTA 180 | || ||| || |||| |||||||| | ||||||||||||||| |||||||| Sbjct 313 CGAAGGGATACCTCCGCATAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAATTA 372 Query 181 ACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCC 228 |||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 373 ACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCC 420 >seq11396 Length=526 Score = 138 bits (152), Expect = 2e-30 Identities = 109/127 (86%), Gaps = 3/127 (2%) Strand=Plus/Minus Query 61 ACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC 120 ||||||||||||||||||||||||| |||| || ||| |||||||||||||||||||||| Sbjct 125 ACCTGTTATTGCCTCAAACTTCCATCGGCTTGA-GCCGATAGTCCCTCTAAGAAGCCAGC 67 Query 121 CACCAACCATAGTCGATGGGG-CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATT 179 | ||| || | || || |||||||| |||||||||||||||||||||||| |||| Sbjct 66 GTACTGCCAAAG-CAATACGGACTATTTAGTAGGTTAAGGTCTCGTTCGTTATCGCAATT 8 Query 180 AACCAGA 186 || |||| Sbjct 7 AAGCAGA 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796638039942