Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20virguliforme_20[genbank_20GCA_5F001680525.1_202016-07-06]
20,982 sequences; 49,446,642 total letters
Query= AAMG01000911.1
Length=280
Score E
Sequences producing significant alignments: (Bits) Value
seq3 367 2e-99
seq18908 307 2e-81
seq11336 251 1e-64
seq11396 138 2e-30
>seq3
Length=4379
Score = 367 bits (406), Expect = 2e-99
Identities = 239/259 (92%), Gaps = 3/259 (1%)
Strand=Plus/Plus
Query 1 TACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 60
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2796 TACTCGCTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 2855
Query 61 ACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC 120
||||||||||||||||||||||||| |||| || ||| ||||||||||||||||||||||
Sbjct 2856 ACCTGTTATTGCCTCAAACTTCCATCGGCTTGA-GCCGATAGTCCCTCTAAGAAGCCAGC 2914
Query 121 CACCAACCATAGTCGATG-GGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATT 179
| ||| || | || |||||||||||||||||||||||||||||||||||| ||||
Sbjct 2915 GTACTGCCAAAG-CAATACGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGCAATT 2973
Query 180 AACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 239
|| ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 2974 AAGCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCACAAAATCAAG 3033
Query 240 AAAGAGCTATCAATCTGTC 258
|||||||| ||||||||||
Sbjct 3034 AAAGAGCTCTCAATCTGTC 3052
>seq18908
Length=311
Score = 307 bits (340), Expect = 2e-81
Identities = 225/258 (87%), Gaps = 4/258 (2%)
Strand=Plus/Plus
Query 3 CTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGAC 62
|||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 22 CTCGTTGGTCGCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGAC 81
Query 63 CTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC-C 121
||||||| |||||| ||||||||||||| | ||||||||||||||||||||| | || |
Sbjct 82 CTGTTATCGCCTCATACTTCCATTGGCTAAACGCCAATAGTCCCTCTAAGAAGTCGGCGC 141
Query 122 ACCAACCATAGTCGATG-GGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTA 180
||| || ||||| | |||||||||||| | ||||||||||||||| |||||| |
Sbjct 142 ACC--GCAGGTGCGATGCTGACTATTTAGCAGGCTGAGGTCTCGTTCGTTACCGGAATCA 199
Query 181 ACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGA 240
||| ||||| || |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 200 ACCTGACAAGGCAACCCACCAACTAAGAACGGCCATGCACCACCACCCACAGAATCAAGA 259
Query 241 AAGAGCTATCAATCTGTC 258
||||||| ||||||||||
Sbjct 260 AAGAGCTCTCAATCTGTC 277
>seq11336
Length=423
Score = 251 bits (278), Expect = 1e-64
Identities = 194/228 (85%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 3 CTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGAC 62
|||| || | | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 193 CTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGAC 252
Query 63 CTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCA 122
||||||||||||||||||||| | || ||| | ||||||||||||||||| |||
Sbjct 253 CTGTTATTGCCTCAAACTTCCGCGGCCTAAAAGGCCGTAGTCCCTCTAAGAAGCTGGCCG 312
Query 123 CCAA-CCATA-GTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTA 180
| || ||| || |||| |||||||| | ||||||||||||||| ||||||||
Sbjct 313 CGAAGGGATACCTCCGCATAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAATTA 372
Query 181 ACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCC 228
|||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 373 ACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCC 420
>seq11396
Length=526
Score = 138 bits (152), Expect = 2e-30
Identities = 109/127 (86%), Gaps = 3/127 (2%)
Strand=Plus/Minus
Query 61 ACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC 120
||||||||||||||||||||||||| |||| || ||| ||||||||||||||||||||||
Sbjct 125 ACCTGTTATTGCCTCAAACTTCCATCGGCTTGA-GCCGATAGTCCCTCTAAGAAGCCAGC 67
Query 121 CACCAACCATAGTCGATGGGG-CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATT 179
| ||| || | || || |||||||| |||||||||||||||||||||||| ||||
Sbjct 66 GTACTGCCAAAG-CAATACGGACTATTTAGTAGGTTAAGGTCTCGTTCGTTATCGCAATT 8
Query 180 AACCAGA 186
|| ||||
Sbjct 7 AAGCAGA 1
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 796638039942
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |