Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20virguliforme_20[genbank_20GCA_5F001680525.1_202016-07-06]
20,982 sequences; 49,446,642 total letters
Query= AAMG01000941.1
Length=299
Score E
Sequences producing significant alignments: (Bits) Value
seq9 342 9e-92
seq20675 271 1e-70
seq14893 271 1e-70
seq652 131 3e-28
>seq9
Length=3953
Score = 342 bits (378), Expect = 9e-92
Identities = 200/206 (97%), Gaps = 1/206 (0%)
Strand=Plus/Minus
Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60
|||||||| |||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 1490 TACTAAGCTGAATTACCATTGCGGCGA-GGTCATCAGTAGGGTAAAACTAACCTGTCTCA 1432
Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1431 CGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 1372
Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1371 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTAT 1312
Query 181 GAACGCTTGGCTGCCACAAGCCAGTT 206
||||||||||| ||||||||||||||
Sbjct 1311 GAACGCTTGGCCGCCACAAGCCAGTT 1286
Score = 163 bits (180), Expect = 5e-38
Identities = 92/93 (99%), Gaps = 0/93 (0%)
Strand=Plus/Minus
Query 203 AGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGA 262
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 901 AGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATGTCGAGGGACTAAAGGA 842
Query 263 TCGATAGGCCACACTTTCATGGTTTGTATTCAC 295
|||||||||||||||||||||||||||||||||
Sbjct 841 TCGATAGGCCACACTTTCATGGTTTGTATTCAC 809
>seq20675
Length=204
Score = 271 bits (300), Expect = 1e-70
Identities = 179/197 (91%), Gaps = 1/197 (1%)
Strand=Plus/Plus
Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTC-ATCAGTAGGGTAAAACTAACCTGTCTC 59
|||| ||| ||||||| || | || ||||| | |||||||||||||||||||||||||
Sbjct 8 TACTGAGCCGAATTACTATGGCGGAATCGGTCCAACAGTAGGGTAAAACTAACCTGTCTC 67
Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119
| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 68 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTGGTG 127
Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179
||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 128 AATGCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 187
Query 180 TGAACGCTTGGCTGCCA 196
|||||||||||||||||
Sbjct 188 TGAACGCTTGGCTGCCA 204
>seq14893
Length=403
Score = 271 bits (300), Expect = 1e-70
Identities = 177/195 (91%), Gaps = 0/195 (0%)
Strand=Plus/Plus
Query 99 TGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAG 158
||||||| ||||||||| |||| ||||||| |||||||||||||||||||||||||
Sbjct 1 TGAACAACCCAACGCTTGGTGAATGCTGCTTCACAATGATAGGAAGAGCCGACATCGAAG 60
Query 159 GATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTA 218
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTA 120
Query 219 ACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTT 278
||||||||| |||||||||| || |||| ||| || ||||||||||| |||||||| |||
Sbjct 121 ACTTTTCTGACACCTCTAGCTTCGAATTCCGAAGGTCTAAAGGATCGTTAGGCCACGCTT 180
Query 279 TCATGGTTTGTATTC 293
||| |||| ||||||
Sbjct 181 TCACGGTTCGTATTC 195
>seq652
Length=7833
Score = 131 bits (144), Expect = 3e-28
Identities = 84/91 (92%), Gaps = 2/91 (2%)
Strand=Plus/Plus
Query 207 ATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGA--GGGACTAAAGGATC 264
|||||||||||||||||||||||||||||||||||| || ||| ||||||||||||||
Sbjct 1529 ATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAGATGTCGCCGGGGACTAAAGGATC 1588
Query 265 GATAGGCCACACTTTCATGGTTTGTATTCAC 295
|||| |||||||||||||||||| |||||||
Sbjct 1589 GATAAGCCACACTTTCATGGTTTATATTCAC 1619
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 854220729792
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |