Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20virguliforme_20[genbank_20GCA_5F001680525.1_202016-07-06]
20,982 sequences; 49,446,642 total letters
Query= AAMG01001884.1
Length=191
Score E
Sequences producing significant alignments: (Bits) Value
seq3 264 1e-68
seq18292 143 3e-32
seq12518 127 2e-27
>seq3
Length=4379
Score = 264 bits (292), Expect = 1e-68
Identities = 174/191 (91%), Gaps = 1/191 (1%)
Strand=Plus/Minus
Query 1 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATA 60
|||| ||||||||||||| |||||||||||||| | || | |||||||| ||||||||||
Sbjct 3552 GGAAACAGGACTTTTACTGTGAAAAAATTAGAGTGCTCCAGGCAGGCCTATGCTCGAATA 3493
Query 61 CATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC 120
||||| |||||||||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct 3492 CATTAGCATGGAATAATAGAATAGGACGTGTGGTTCTATTTTGTTGGTTTCTAGGACCG- 3434
Query 121 CCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTC 180
|||||||||| |||| ||| ||||||||| ||||||||||||||||| |||||||||||
Sbjct 3433 CCGTAATGATTAATAGGGACAGTCGGGGGCATCAGTATTCAATTGTCAGAGGTGAAATTC 3374
Query 181 TTGGATTTATT 191
|||||||||||
Sbjct 3373 TTGGATTTATT 3363
>seq18292
Length=424
Score = 143 bits (158), Expect = 3e-32
Identities = 141/177 (80%), Gaps = 5/177 (3%)
Strand=Plus/Minus
Query 14 TTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCATGGA 72
||||||||| ||||||||| ||||||||||||||| |||| |||||||||| ||||||
Sbjct 324 TTACTTTGAGTAAATTAGAGTGTTCAAAGCAGGCCTACGCTCTGAATACATTAGCATGGA 265
Query 73 ATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATAA 132
|||| | ||||||| | | |||| | || ||| | | |||||| |||||||| |
Sbjct 264 ATAACACGATAGGACT--CTGGCCTATCT-GTTGGTCTGTGGGACCGGA-GTAATGATTA 209
Query 133 ATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189
| | || |||||||||| | |||||| |||||| ||||||||||||||||||||
Sbjct 208 AGAGGGGTAGTCGGGGGCATTCGTATTCCGTTGTCAGAGGTGAAATTCTTGGATTTA 152
>seq12518
Length=902
Score = 127 bits (140), Expect = 2e-27
Identities = 139/181 (77%), Gaps = 3/181 (2%)
Strand=Plus/Minus
Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69
|| |||||||||| ||||||||| | |||||||| |||| |||| | |||||||| |||
Sbjct 503 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCAT 444
Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129
|| |||| | |||||| | |||| ||||| || || | ||| || |||||||
Sbjct 443 GGGATAACATTATAGGATTT-CGGTCCTATTACGTTGGCCTTCGGGATCGGA-GTAATGA 386
Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189
| || | ||| ||||||||| | ||||| || |||| ||||||||||||||||||||
Sbjct 385 TTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTA 326
Query 190 T 190
|
Sbjct 325 T 325
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 511895929280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |