Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20virguliforme_20[genbank_20GCA_5F001680525.1_202016-07-06]
20,982 sequences; 49,446,642 total letters
Query= AAMG01002199.1
Length=543
Score E
Sequences producing significant alignments: (Bits) Value
seq9 798 0.0
seq18504 185 3e-44
seq20897 172 2e-40
seq14893 168 2e-39
seq766 93.3 1e-16
>seq9
Length=3953
Score = 798 bits (884), Expect = 0.0
Identities = 500/537 (93%), Gaps = 5/537 (1%)
Strand=Plus/Minus
Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66
|||||| ||||| |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 777 CTTTTGTTCTACTGGAGATTTCTGTTCTCCATGAGCCCCCCTTAGGACACCTGCGTTATG 718
Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 717 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCAACCCGGGTC 658
Query 127 GGCCCGCGAAGGACCTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCATTGA 186
||||||||||||||||||| |||||| ||| || || |||| ||||||||||||
Sbjct 657 GGCCCGCGAAGGACCTTAAAACCAGAAGTTGGACGA--AAATCCAGCCCCGCTTCATTGA 600
Query 187 TTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTA 246
||||||||||||| ||| | ||||||||||||||| |||||||| |||||||| ||
Sbjct 599 ATAAGTAAAAAAACAATAGGAGTAGTGGTATTTCACCGGCGCCGAA---GCTCCCACCTA 543
Query 247 TTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTC 306
||||||||||| | ||| |||||||| ||| |||||||||||||||||||||||||||
Sbjct 542 TTCTACACCTCCTATGTCTTTTCACAATGTCAAACTAGAGTCAAGCTCAACAGGGTCTTC 483
Query 307 TTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATA 366
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 482 TTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATA 423
Query 367 GGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATT 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 422 GGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATT 363
Query 427 TGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCT 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 362 TGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTACT 303
Query 487 TCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCACTTTCTG 543
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 302 TCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACACCACTTTCTG 246
>seq18504
Length=212
Score = 185 bits (204), Expect = 3e-44
Identities = 107/110 (97%), Gaps = 0/110 (0%)
Strand=Plus/Minus
Query 332 GTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCC 391
||||| |||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 210 GTTCCGTTGGCTTTGATTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCC 151
Query 392 ATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAG 441
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 150 ATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAG 101
>seq20897
Length=209
Score = 172 bits (190), Expect = 2e-40
Identities = 100/102 (98%), Gaps = 1/102 (1%)
Strand=Plus/Plus
Query 439 GAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACAT 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACAT 60
Query 499 TCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCACTTT 540
||||||||||||||||||||||||||| ||||||||| ||||
Sbjct 61 TCAGAGCACTGGGCAGAAATCACATTGTGTCAACATC-CTTT 101
>seq14893
Length=403
Score = 168 bits (186), Expect = 2e-39
Identities = 116/131 (89%), Gaps = 0/131 (0%)
Strand=Plus/Plus
Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66
||| || || ||| ||||||||||||||| |||| | |||||||||||||||||||
Sbjct 229 CTTCTGTTCCACACGAGATTTCTGTTCTCGTTGAGCTCATCTTAGGACACCTGCGTTATC 288
Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 289 TTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCCGCCCGGATC 348
Query 127 GGCCCGCGAAG 137
|||||||||||
Sbjct 349 GGCCCGCGAAG 359
>seq766
Length=9668
Score = 93.3 bits (102), Expect = 1e-16
Identities = 76/92 (83%), Gaps = 4/92 (4%)
Strand=Plus/Plus
Query 6 TCTTTTGCTCTACA----GGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCG 61
||||||| |||||| | |||||||||||||| |||| |||| ||||||||||||||
Sbjct 652 TCTTTTGTTCTACATATGGAAGATTTCTGTTCTCGATGAACCCCCTTTAGGACACCTGCG 711
Query 62 TTATGGTTTAACAGATGTGCCGCCCCAGCCAA 93
|||| |||| | |||| | ||||||||||||
Sbjct 712 TTATAGTTTGATAGATTTATCGCCCCAGCCAA 743
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1634856902336
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |