Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20virguliforme_20[genbank_20GCA_5F001680525.1_202016-07-06]
20,982 sequences; 49,446,642 total letters
Query= AAMG01002244.1
Length=504
Score E
Sequences producing significant alignments: (Bits) Value
seq3 735 0.0
seq19290 318 2e-84
seq19679 271 2e-70
seq12518 248 3e-63
seq20012 237 5e-60
seq20316 208 2e-51
>seq3
Length=4379
Score = 735 bits (814), Expect = 0.0
Identities = 466/504 (92%), Gaps = 1/504 (0%)
Strand=Plus/Plus
Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3766 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 3825
Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 3826 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTAGTAGCCGTT 3885
Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180
||||||||||| ||||||| |||| |||||| | ||||||||||||| |||||| |
Sbjct 3886 TCTCAGGCTCCTTCTCCGGGGTCGAGCCCTAACCCTCCGTTACCCGTTGCAACCATGTTT 3945
Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240
||||| || || | |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 3946 GGCCAATACCCAAACATCGAAAGTTGATAGGGAAGAAATTTGAATGAACCATCGCCGGCG 4005
Query 241 CAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGT 300
||||||||||||||||| |||||| ||||||||||| ||||||| ||||| |||||
Sbjct 4006 CAAGGCCATGCGATTCGAGGAGTTATCATGAATCACCAGTAAGCCCCGGAGGGCATTGGT 4065
Query 301 TTTTTATCTAATAAATACACCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCTCTAG 360
|||| |||||||||||||| |||||||||||| ||| |||||||||||||||||||||||
Sbjct 4066 TTTTAATCTAATAAATACATCCCTTCCGAAGTTGGGATTTTTAGCATGTATTAGCTCTAG 4125
Query 361 AATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGA 420
|||||||||||||||||| |||||| |||||||||||||||||||||||| || ||||||
Sbjct 4126 AATTACCACGGTTATCCAAGTAGTAGGGTACTATCAAATAAACGATAACTTATATAATGA 4185
Query 421 GCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTG 480
||| ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 4186 GCCGTTCGCAGTTTCGCTGTATA-ATTGCTTATACTTAGACATGCATGGCTTAATCTTTG 4244
Query 481 AGACAAGCATATGACTACTGGCAG 504
||||||||||||||||||||||||
Sbjct 4245 AGACAAGCATATGACTACTGGCAG 4268
>seq19290
Length=307
Score = 318 bits (352), Expect = 2e-84
Identities = 248/291 (85%), Gaps = 10/291 (3%)
Strand=Plus/Plus
Query 87 GCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAA 146
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3 GCGCTTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAA 62
Query 147 CCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTG 206
||||||||| |||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct 63 CCCTAATTCTCCGTCACCCGTCACCACCATGGTAGGCCACTATCCTACCATCGAAAGTTG 122
Query 207 ATAGGGCAGAAATTTGAATGAACCATCGCCGGCTC-AAGGCCATGCGATTCGTTAAGTTA 265
||||||||||||||||||||| | |||||||| | | |||| |||||| ||| |||||
Sbjct 123 ATAGGGCAGAAATTTGAATGATGCGTCGCCGGCACGATGGCCGTGCGATCCGTCGAGTTA 182
Query 266 TTATGAATCACCAAGGAGC--CCCGAAG----GGCGTTGGTTTTTTATCTAATAAATACA 319
| |||||||| | | ||| | | || |||| | ||||||||||||||| ||
Sbjct 183 TCATGAATCATC--GCAGCAACGGGCAGAGCCCGCGTCGACCTTTTATCTAATAAATGCA 240
Query 320 CCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATTAGCTCTAGAATTACCAC 369
||||||| ||||||||||||| | ||| ||||||||||||||||||| ||
Sbjct 241 TCCCTTCCAGAAGTCGGGGTTTGTTGCACGTATTAGCTCTAGAATTACTAC 291
>seq19679
Length=220
Score = 271 bits (300), Expect = 2e-70
Identities = 184/204 (90%), Gaps = 2/204 (1%)
Strand=Plus/Minus
Query 302 TTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATTAGCTCTAG 360
||||||||||||||| || ||||||| ||||||||||||| | ||| |||||||||||||
Sbjct 204 TTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACGTATTAGCTCTAG 145
Query 361 AATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGA 420
|||||| |||||||||| |||||| | ||| |||||| |||| ||||||||||||||||
Sbjct 144 AATTACTACGGTTATCCGAGTAGTA-GATACCATCAAACAAACTATAACTGATTTAATGA 86
Query 421 GCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTG 480
||||||||||||||||| ||||| | |||||||||||||||||||||||||||||||
Sbjct 85 GCCATTCGCAGTTTCACAGTATAAGCAGTTTATACTTAGACATGCATGGCTTAATCTTTG 26
Query 481 AGACAAGCATATGACTACTGGCAG 504
||||||||||||||||||||||||
Sbjct 25 AGACAAGCATATGACTACTGGCAG 2
>seq12518
Length=902
Score = 248 bits (274), Expect = 3e-63
Identities = 156/167 (93%), Gaps = 1/167 (1%)
Strand=Plus/Plus
Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60
||||||||||||||||| |||| || | |||||| |||| ||||||||||||||||||
Sbjct 726 GTACTCATTCCAATTACCAGACTCATA-GAGCCCGGTATTGTTATTTATTGTCACTACCT 784
Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 785 CCCCGTGTCAGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 844
Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGT 167
||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct 845 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCTCCGTCACCCGT 891
>seq20012
Length=236
Score = 237 bits (262), Expect = 5e-60
Identities = 154/168 (92%), Gaps = 1/168 (1%)
Strand=Plus/Plus
Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60
||||||||||||||||| |||| | || | |||| |||| ||||||||||||||||||
Sbjct 69 GTACTCATTCCAATTACCAGACGCGAA-GCGCCCGGTATTGTTATTTATTGTCACTACCT 127
Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 128 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCATC 187
Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTT 168
||||||||||||||||||||||||||||||||| | |||| |||||||
Sbjct 188 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATCCTCCGTCACCCGTT 235
>seq20316
Length=208
Score = 208 bits (230), Expect = 2e-51
Identities = 173/208 (83%), Gaps = 5/208 (2%)
Strand=Plus/Plus
Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180
|| |||||||||||||||||||||||||||||| | |||| ||||||| |||||||||
Sbjct 2 TCCCAGGCTCCCTCTCCGGAATCGAACCCTAATCCTCCGTCACCCGTTACCACCATGGTA 61
Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240
|||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 62 GGCCTCTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAAACATCGTCGGGA 121
Query 241 CAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGC---GTT 297
| || |||| |||||||| ||||||| |||| ||||| | | | | || || | |
Sbjct 122 CGAGCCCATACGATTCGTGAAGTTATCATGATTCACCGCAG-GTCGGGCAGAGCCCGGCT 180
Query 298 GGTTTTTTATCTAATAAAT-ACACCCCT 324
|| ||||||||||||||| | ||||||
Sbjct 181 GGCCTTTTATCTAATAAATAAGACCCCT 208
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1510083087872
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |