Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20virguliforme_20[genbank_20GCA_5F001680605.1_202016-07-06] 25,286 sequences; 50,152,336 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq6 585 1e-164 seq5 295 3e-77 seq24272 176 2e-41 seq25041 158 5e-36 seq7871 82.4 3e-13 >seq6 Length=3992 Score = 585 bits (648), Expect = 1e-164 Identities = 473/564 (84%), Gaps = 10/564 (2%) Strand=Plus/Plus Query 122 ACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAA 181 |||||||||||||||||||||||||||| |||||| |||||||||||||||| ||||||| Sbjct 94 ACAAGTAGAGTGATCGAAAGATGAAAAGAACTTTGAAAAGAGAGTTAAAAAGTACGTGAA 153 Query 182 ATTGTTGAAAGGGAAGCGCTTGCAACCAGACTTGCCCGCAGTTGCTCAACC-GGCCCCTC 240 |||||||||||||||||||||| |||||||||| | |||| ||| || || ||| Sbjct 154 ATTGTTGAAAGGGAAGCGCTTGTGACCAGACTTGGGCTTGGTTGATCATCCAGGGTTCTC 213 Query 241 GGCCGGTGCACTCTTCTGCGGTCAGGCCAGCATCAGCTCGGGCGGTCGGATAAAGGCCCC 300 | |||||||||||| | | |||||||||||||| | | | | |||||||||| | Sbjct 214 C-CTGGTGCACTCTTCCG-GCCCAGGCCAGCATCAGTTTGCCCCGGGGGATAAAGGCGTC 271 Query 301 GGGAATGTGGCCCCCTTCGGGGGGTGTTATAGCCCGGGGTGGAATGCGGCCCGCCTGGAC 360 ||||||||||| |||| ||||| |||||||||||||| | | ||| | | | |||| Sbjct 272 GGGAATGTGGCTCCCTCCGGGGAGTGTTATAGCCCGGCGCGCAATACCCTGAGGC-GGAC 330 Query 361 TGAGGTCCGCGCTCCGGCTAGGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAAC 420 |||||| ||||| || ||||||||||||||||||| | || | ||||||||| ||| Sbjct 331 TGAGGTTCGCGCATTCGCAAGGATGCTGGCGTAATGGTCATCAGTGACCCGTCTTGAAAC 390 Query 421 ACGGACCAAGGAGTCTAACATC-TATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAAT 479 ||||||||||||||| | || |||||||||||| ||||||||||||| | |||||||| Sbjct 391 ACGGACCAAGGAGTCGT-CTTCGTATGCGAGTGTTCGGGTGTCAAACCCCTACGCGTAAT 449 Query 480 GAAAGTGAACGGAGGTGGGAACCCGTGAGGGTGCACCATCGACCGATCCTGATGTCTTCG 539 ||||||||||| ||||| || | || ||| ||||||||||||||||||| |||| Sbjct 450 GAAAGTGAACGCAGGTGAGAGCTTC----GGCGCATCATCGACCGATCCTGATGTTTTCG 505 Query 540 GATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAAT 599 |||||||||||||||||||||| | |||||||||||| ||||||||||||||| || Sbjct 506 GATGGATTTGAGTAAGAGCATACGGGGCCGGACCCGAAAGAAGGTGAACTATGCCTGTAT 565 Query 600 AGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGAT 659 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 566 AGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGAT 625 Query 660 CGTCAAATTTGGGTATAGGGGCGA 683 |||||||| |||| || ||||||| Sbjct 626 CGTCAAATATGGGCATGGGGGCGA 649 >seq5 Length=3444 Score = 295 bits (326), Expect = 3e-77 Identities = 181/193 (94%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 23 TGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAAT 82 ||| |||||||||||||||||||||| |||||||||||| ||||||||||||||||| || Sbjct 3248 TGTAAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCTAAATGGGAGGTATAT 3307 Query 83 TTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGA 142 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 3308 GTCTTCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGA 3367 Query 143 TGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTT 202 ||||||| |||||| |||||||||||||||| |||||||||||||||||||||||||||| Sbjct 3368 TGAAAAGAACTTTGAAAAGAGAGTTAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCTT 3427 Query 203 GCAACCAGACTTG 215 | |||||||||| Sbjct 3428 GTGACCAGACTTG 3440 >seq24272 Length=256 Score = 176 bits (194), Expect = 2e-41 Identities = 126/145 (87%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 539 GGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAA 598 ||| || || |||| ||||||| |||| |||||||||||||||||||||||||||||| Sbjct 253 GGAAGGGTTCGAGTGTGAGCATACCTGTCGGGACCCGAAAGATGGTGAACTATGCCTGAG 194 Query 599 TAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGA 658 ||| ||||||||||||||||||||||||||| ||||||| | ||| ||||||||||| Sbjct 193 CGGGGCGAAGCCAGAGGAAACTCTGGTGGAGGCCCGCAGCGATACTGACGTGCAAATCGT 134 Query 659 TCGTCAAATTTGGGTATAGGGGCGA 683 ||||| | |||||||||||||||| Sbjct 133 TCGTCTGACTTGGGTATAGGGGCGA 109 >seq25041 Length=236 Score = 158 bits (174), Expect = 5e-36 Identities = 134/165 (81%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 35 TCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGC 94 || |||||||| |||||||||||||||||| | || ||| ||| |||| | || || || Sbjct 177 TCTACGAGTCGGGTTGTTTGGGAATGCAGCCCAAATCGGGCGGTGAATTCCGTCCAAGGC 118 Query 95 TAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTT 154 |||||| ||| |||||||||||||| ||||||| | || ||||||||||||| |||| Sbjct 117 TAAATACGGGCGAGAGACCGATAGCGAACAAGTACCGCGAGGGAAAGATGAAAAGGACTT 58 Query 155 TGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 || ||||||||| ||| || | ||||||||| | ||||||||| Sbjct 57 TGAAAAGAGAGTCAAAGAGTGCTTGAAATTGTCGGGAGGGAAGCG 13 >seq7871 Length=2429 Score = 82.4 bits (90), Expect = 3e-13 Identities = 108/145 (74%), Gaps = 5/145 (3%) Strand=Plus/Minus Query 206 ACCAGACTTGCCCGCAGTTGCTCAACC-GGCCCCTCGGCCGGTGCACTCTTCTGCGGTC- 263 |||||||||| | |||| ||| || || ||| | ||||| |||||| ||||| Sbjct 2347 ACCAGACTTGGGCTTGGTTGATCACCCAGGGTTCTCT-CTGGTGCGCTCTTC--CGGTCC 2291 Query 264 AGGCCAGCATCAGCTCGGGCGGTCGGATAAAGGCCCCGGGAATGTGGCCCCCTTCGGGGG 323 ||||||||||||| | | | | |||||||| | ||||||| |||| |||| | ||| Sbjct 2290 AGGCCAGCATCAGTTTGCCCCGGGGGATAAAGACGTCGGGAATCTGGCTCCCTCCAGGGA 2231 Query 324 GTGTTATAGCCCGGGGTGGAATGCG 348 |||||||||||| | ||| ||| || Sbjct 2230 GTGTTATAGCCCAGCGTGTAATACG 2206 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079457615300