Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20virguliforme_20[genbank_20GCA_5F001680605.1_202016-07-06]
25,286 sequences; 50,152,336 total letters
Query= AAMG01000304.1
Length=683
Score E
Sequences producing significant alignments: (Bits) Value
seq6 585 1e-164
seq5 295 3e-77
seq24272 176 2e-41
seq25041 158 5e-36
seq7871 82.4 3e-13
>seq6
Length=3992
Score = 585 bits (648), Expect = 1e-164
Identities = 473/564 (84%), Gaps = 10/564 (2%)
Strand=Plus/Plus
Query 122 ACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAA 181
|||||||||||||||||||||||||||| |||||| |||||||||||||||| |||||||
Sbjct 94 ACAAGTAGAGTGATCGAAAGATGAAAAGAACTTTGAAAAGAGAGTTAAAAAGTACGTGAA 153
Query 182 ATTGTTGAAAGGGAAGCGCTTGCAACCAGACTTGCCCGCAGTTGCTCAACC-GGCCCCTC 240
|||||||||||||||||||||| |||||||||| | |||| ||| || || |||
Sbjct 154 ATTGTTGAAAGGGAAGCGCTTGTGACCAGACTTGGGCTTGGTTGATCATCCAGGGTTCTC 213
Query 241 GGCCGGTGCACTCTTCTGCGGTCAGGCCAGCATCAGCTCGGGCGGTCGGATAAAGGCCCC 300
| |||||||||||| | | |||||||||||||| | | | | |||||||||| |
Sbjct 214 C-CTGGTGCACTCTTCCG-GCCCAGGCCAGCATCAGTTTGCCCCGGGGGATAAAGGCGTC 271
Query 301 GGGAATGTGGCCCCCTTCGGGGGGTGTTATAGCCCGGGGTGGAATGCGGCCCGCCTGGAC 360
||||||||||| |||| ||||| |||||||||||||| | | ||| | | | ||||
Sbjct 272 GGGAATGTGGCTCCCTCCGGGGAGTGTTATAGCCCGGCGCGCAATACCCTGAGGC-GGAC 330
Query 361 TGAGGTCCGCGCTCCGGCTAGGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAAC 420
|||||| ||||| || ||||||||||||||||||| | || | ||||||||| |||
Sbjct 331 TGAGGTTCGCGCATTCGCAAGGATGCTGGCGTAATGGTCATCAGTGACCCGTCTTGAAAC 390
Query 421 ACGGACCAAGGAGTCTAACATC-TATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAAT 479
||||||||||||||| | || |||||||||||| ||||||||||||| | ||||||||
Sbjct 391 ACGGACCAAGGAGTCGT-CTTCGTATGCGAGTGTTCGGGTGTCAAACCCCTACGCGTAAT 449
Query 480 GAAAGTGAACGGAGGTGGGAACCCGTGAGGGTGCACCATCGACCGATCCTGATGTCTTCG 539
||||||||||| ||||| || | || ||| ||||||||||||||||||| ||||
Sbjct 450 GAAAGTGAACGCAGGTGAGAGCTTC----GGCGCATCATCGACCGATCCTGATGTTTTCG 505
Query 540 GATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAAT 599
|||||||||||||||||||||| | |||||||||||| ||||||||||||||| ||
Sbjct 506 GATGGATTTGAGTAAGAGCATACGGGGCCGGACCCGAAAGAAGGTGAACTATGCCTGTAT 565
Query 600 AGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGAT 659
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 566 AGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGAT 625
Query 660 CGTCAAATTTGGGTATAGGGGCGA 683
|||||||| |||| || |||||||
Sbjct 626 CGTCAAATATGGGCATGGGGGCGA 649
>seq5
Length=3444
Score = 295 bits (326), Expect = 3e-77
Identities = 181/193 (94%), Gaps = 0/193 (0%)
Strand=Plus/Plus
Query 23 TGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAAT 82
||| |||||||||||||||||||||| |||||||||||| ||||||||||||||||| ||
Sbjct 3248 TGTAAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCTAAATGGGAGGTATAT 3307
Query 83 TTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGA 142
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 3308 GTCTTCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGA 3367
Query 143 TGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTT 202
||||||| |||||| |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 3368 TGAAAAGAACTTTGAAAAGAGAGTTAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCTT 3427
Query 203 GCAACCAGACTTG 215
| ||||||||||
Sbjct 3428 GTGACCAGACTTG 3440
>seq24272
Length=256
Score = 176 bits (194), Expect = 2e-41
Identities = 126/145 (87%), Gaps = 0/145 (0%)
Strand=Plus/Minus
Query 539 GGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAA 598
||| || || |||| ||||||| |||| ||||||||||||||||||||||||||||||
Sbjct 253 GGAAGGGTTCGAGTGTGAGCATACCTGTCGGGACCCGAAAGATGGTGAACTATGCCTGAG 194
Query 599 TAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGA 658
||| ||||||||||||||||||||||||||| ||||||| | ||| |||||||||||
Sbjct 193 CGGGGCGAAGCCAGAGGAAACTCTGGTGGAGGCCCGCAGCGATACTGACGTGCAAATCGT 134
Query 659 TCGTCAAATTTGGGTATAGGGGCGA 683
||||| | ||||||||||||||||
Sbjct 133 TCGTCTGACTTGGGTATAGGGGCGA 109
>seq25041
Length=236
Score = 158 bits (174), Expect = 5e-36
Identities = 134/165 (81%), Gaps = 0/165 (0%)
Strand=Plus/Minus
Query 35 TCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGC 94
|| |||||||| |||||||||||||||||| | || ||| ||| |||| | || || ||
Sbjct 177 TCTACGAGTCGGGTTGTTTGGGAATGCAGCCCAAATCGGGCGGTGAATTCCGTCCAAGGC 118
Query 95 TAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTT 154
|||||| ||| |||||||||||||| ||||||| | || ||||||||||||| ||||
Sbjct 117 TAAATACGGGCGAGAGACCGATAGCGAACAAGTACCGCGAGGGAAAGATGAAAAGGACTT 58
Query 155 TGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199
|| ||||||||| ||| || | ||||||||| | |||||||||
Sbjct 57 TGAAAAGAGAGTCAAAGAGTGCTTGAAATTGTCGGGAGGGAAGCG 13
>seq7871
Length=2429
Score = 82.4 bits (90), Expect = 3e-13
Identities = 108/145 (74%), Gaps = 5/145 (3%)
Strand=Plus/Minus
Query 206 ACCAGACTTGCCCGCAGTTGCTCAACC-GGCCCCTCGGCCGGTGCACTCTTCTGCGGTC- 263
|||||||||| | |||| ||| || || ||| | ||||| |||||| |||||
Sbjct 2347 ACCAGACTTGGGCTTGGTTGATCACCCAGGGTTCTCT-CTGGTGCGCTCTTC--CGGTCC 2291
Query 264 AGGCCAGCATCAGCTCGGGCGGTCGGATAAAGGCCCCGGGAATGTGGCCCCCTTCGGGGG 323
||||||||||||| | | | | |||||||| | ||||||| |||| |||| | |||
Sbjct 2290 AGGCCAGCATCAGTTTGCCCCGGGGGATAAAGACGTCGGGAATCTGGCTCCCTCCAGGGA 2231
Query 324 GTGTTATAGCCCGGGGTGGAATGCG 348
|||||||||||| | ||| ||| ||
Sbjct 2230 GTGTTATAGCCCAGCGTGTAATACG 2206
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 2079457615300
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |