Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20virguliforme_20[genbank_20GCA_5F001680605.1_202016-07-06]
25,286 sequences; 50,152,336 total letters
Query= AAMG01000941.1
Length=299
Score E
Sequences producing significant alignments: (Bits) Value
seq6 497 2e-138
seq20767 331 2e-88
seq21711 150 3e-34
seq1249 131 3e-28
>seq6
Length=3992
Score = 497 bits (550), Expect = 2e-138
Identities = 288/295 (98%), Gaps = 1/295 (0%)
Strand=Plus/Minus
Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60
|||||||| |||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 3123 TACTAAGCTGAATTACCATTGCGGCGA-GGTCATCAGTAGGGTAAAACTAACCTGTCTCA 3065
Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3064 CGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 3005
Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 3004 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTAT 2945
Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2944 GAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 2885
Query 241 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCAC 295
||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2884 CAAATGTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCAC 2830
>seq20767
Length=206
Score = 331 bits (366), Expect = 2e-88
Identities = 191/196 (97%), Gaps = 0/196 (0%)
Strand=Plus/Plus
Query 100 GAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGG 159
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 10 GAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGG 69
Query 160 ATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAA 219
|||||||||| |||||||||||| |||| ||| |||||||||||||||||||||||||||
Sbjct 70 ATCAAAAAGCGACGTCGCTATGACCGCTGGGCCGCCACAAGCCAGTTATCCCTGTGGTAA 129
Query 220 CTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTT 279
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 130 CTTTTCTGGCACCTCTAGCCTCAAATGTCGAGGGACTAAAGGATCGATAGGCCACACTTT 189
Query 280 CATGGTTTGTATTCAC 295
||||||||||||||||
Sbjct 190 CATGGTTTGTATTCAC 205
>seq21711
Length=276
Score = 150 bits (166), Expect = 3e-34
Identities = 98/108 (91%), Gaps = 0/108 (0%)
Strand=Plus/Plus
Query 186 CTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAAT 245
|||||||||||||||||||||||||||||||||||||||||| |||||||||| || |||
Sbjct 1 CTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTAGCTTCGAAT 60
Query 246 TTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293
| ||| || ||||||||||| |||||||| |||||| |||| ||||||
Sbjct 61 TCCGAAGGTCTAAAGGATCGTTAGGCCACGCTTTCACGGTTCGTATTC 108
>seq1249
Length=6219
Score = 131 bits (144), Expect = 3e-28
Identities = 84/91 (92%), Gaps = 2/91 (2%)
Strand=Plus/Plus
Query 207 ATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGA--GGGACTAAAGGATC 264
|||||||||||||||||||||||||||||||||||| || ||| ||||||||||||||
Sbjct 1775 ATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAGATGTCGCCGGGGACTAAAGGATC 1834
Query 265 GATAGGCCACACTTTCATGGTTTGTATTCAC 295
|||| |||||||||||||||||| |||||||
Sbjct 1835 GATAAGCCACACTTTCATGGTTTATATTCAC 1865
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 854183956416
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |