Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20virguliforme_20[genbank_20GCA_5F001680605.1_202016-07-06]
25,286 sequences; 50,152,336 total letters
Query= AAMG01002199.1
Length=543
Score E
Sequences producing significant alignments: (Bits) Value
seq6 623 3e-176
seq17156 163 9e-38
seq21711 158 4e-36
seq9560 93.3 1e-16
>seq6
Length=3992
Score = 623 bits (690), Expect = 3e-176
Identities = 400/435 (92%), Gaps = 5/435 (1%)
Strand=Plus/Minus
Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66
|||||| ||||| |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2798 CTTTTGTTCTACTGGAGATTTCTGTTCTCCATGAGCCCCCCTTAGGACACCTGCGTTATG 2739
Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 2738 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCAACCCGGGTC 2679
Query 127 GGCCCGCGAAGGACCTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCATTGA 186
||||||||||||||||||| |||||| ||| || || |||| ||||||||||||
Sbjct 2678 GGCCCGCGAAGGACCTTAAAACCAGAAGTTGGACGA--AAATCCAGCCCCGCTTCATTGA 2621
Query 187 TTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTA 246
||||||||||||| ||| | ||||||||||||||| |||||||| |||||||| ||
Sbjct 2620 ATAAGTAAAAAAACAATAGGAGTAGTGGTATTTCACCGGCGCCGAA---GCTCCCACCTA 2564
Query 247 TTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTC 306
||||||||||| | ||| |||||||| ||| |||||||||||||||||||||||||||
Sbjct 2563 TTCTACACCTCCTATGTCTTTTCACAATGTCAAACTAGAGTCAAGCTCAACAGGGTCTTC 2504
Query 307 TTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATA 366
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2503 TTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATA 2444
Query 367 GGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATT 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2443 GGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATT 2384
Query 427 TGGCTACCTTAAGAG 441
|||||||||||||||
Sbjct 2383 TGGCTACCTTAAGAG 2369
Score = 178 bits (196), Expect = 4e-42
Identities = 101/103 (98%), Gaps = 0/103 (0%)
Strand=Plus/Minus
Query 441 GAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTC 500
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1981 GAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTACTTCACTTTGACATTC 1922
Query 501 AGAGCACTGGGCAGAAATCACATTGCGTCAACATCACTTTCTG 543
||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1921 AGAGCACTGGGCAGAAATCACATTGCGTCAACACCACTTTCTG 1879
>seq17156
Length=1044
Score = 163 bits (180), Expect = 9e-38
Identities = 92/93 (99%), Gaps = 0/93 (0%)
Strand=Plus/Minus
Query 441 GAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTC 500
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 95 GAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTACTTCACTTTGACATTC 36
Query 501 AGAGCACTGGGCAGAAATCACATTGCGTCAACA 533
|||||||||||||||||||||||||||||||||
Sbjct 35 AGAGCACTGGGCAGAAATCACATTGCGTCAACA 3
>seq21711
Length=276
Score = 158 bits (174), Expect = 4e-36
Identities = 110/125 (88%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66
||| || || ||| ||||||||||||||| |||| | |||||||||||||||||||
Sbjct 142 CTTCTGTTCCACACGAGATTTCTGTTCTCGTTGAGCTCATCTTAGGACACCTGCGTTATC 201
Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 202 TTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCCGCCCGGATC 261
Query 127 GGCCC 131
|||||
Sbjct 262 GGCCC 266
>seq9560
Length=1516
Score = 93.3 bits (102), Expect = 1e-16
Identities = 76/92 (83%), Gaps = 4/92 (4%)
Strand=Plus/Plus
Query 6 TCTTTTGCTCTACA----GGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCG 61
||||||| |||||| | |||||||||||||| |||| |||| ||||||||||||||
Sbjct 683 TCTTTTGTTCTACATATGGAAGATTTCTGTTCTCGATGAACCCCCTTTAGGACACCTGCG 742
Query 62 TTATGGTTTAACAGATGTGCCGCCCCAGCCAA 93
|||| |||| | |||| | ||||||||||||
Sbjct 743 TTATAGTTTGATAGATTTATCGCCCCAGCCAA 774
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1634786523328
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |