Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20virguliforme_20[genbank_20GCA_5F001680665.1_202016-07-06] 25,997 sequences; 50,938,851 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq2 731 0.0 seq9086 82.4 3e-13 >seq2 Length=6014 Score = 731 bits (810), Expect = 0.0 Identities = 565/663 (85%), Gaps = 10/663 (2%) Strand=Plus/Plus Query 23 TGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAAT 82 ||| |||||||||||||||||||||| |||||||||||| ||||||||||||||||| || Sbjct 4129 TGTAAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCTAAATGGGAGGTATAT 4188 Query 83 TTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGA 142 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 4189 GTCTTCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGA 4248 Query 143 TGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTT 202 ||||||| |||||| |||||||||||||||| |||||||||||||||||||||||||||| Sbjct 4249 TGAAAAGAACTTTGAAAAGAGAGTTAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCTT 4308 Query 203 GCAACCAGACTTGCCCGCAGTTGCTCAACC-GGCCCCTCGGCCGGTGCACTCTTCTGCGG 261 | |||||||||| | |||| ||| || || ||| | |||||||||||| | | Sbjct 4309 GTGACCAGACTTGGGCTTGGTTGATCATCCAGGGTTCTC-CCTGGTGCACTCTTCCG-GC 4366 Query 262 TCAGGCCAGCATCAGCTCGGGCGGTCGGATAAAGGCCCCGGGAATGTGGCCCCCTTCGGG 321 |||||||||||||| | | | | |||||||||| |||||||||||| |||| |||| Sbjct 4367 CCAGGCCAGCATCAGTTTGCCCCGGGGGATAAAGGCGTCGGGAATGTGGCTCCCTCCGGG 4426 Query 322 GGGTGTTATAGCCCGGGGTGGAATGCGGCCCGCCTGGACTGAGGTCCGCGCTCCGGCTAG 381 | |||||||||||||| | | ||| | | | |||||||||| ||||| || || Sbjct 4427 GAGTGTTATAGCCCGGCGCGCAATACCCTGAGGC-GGACTGAGGTTCGCGCATTCGCAAG 4485 Query 382 GATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACAT 441 ||||||||||||||||| | || | ||||||||| |||||||||||||||||| | | Sbjct 4486 GATGCTGGCGTAATGGTCATCAGTGACCCGTCTTGAAACACGGACCAAGGAGTC-GTCTT 4544 Query 442 C-TATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAGTGAACGGAGGTGGGAA 500 | |||||||||||| ||||||||||||| | ||||||||||||||||||| ||||| || Sbjct 4545 CGTATGCGAGTGTTCGGGTGTCAAACCCCTACGCGTAATGAAAGTGAACGCAGGTGAGA- 4603 Query 501 CCCGTGAGGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCAT 560 | || ||| ||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 4604 ---GCTTCGGCGCATCATCGACCGATCCTGATGTTTTCGGATGGATTTGAGTAAGAGCAT 4660 Query 561 AGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACT 620 | | |||||||||||| ||||||||||||||| ||||||||||||||||||||||| Sbjct 4661 ACGGGGCCGGACCCGAAAGAAGGTGAACTATGCCTGTATAGGGTGAAGCCAGAGGAAACT 4720 Query 621 CTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGG 680 ||||||||||||||||||||||||| ||||||||||||||||||||| |||| || |||| Sbjct 4721 CTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATATGGGCATGGGGG 4780 Query 681 CGA 683 ||| Sbjct 4781 CGA 4783 >seq9086 Length=1705 Score = 82.4 bits (90), Expect = 3e-13 Identities = 108/145 (74%), Gaps = 5/145 (3%) Strand=Plus/Plus Query 206 ACCAGACTTGCCCGCAGTTGCTCAACC-GGCCCCTCGGCCGGTGCACTCTTCTGCGGTC- 263 |||||||||| | |||| ||| || || ||| | ||||| |||||| ||||| Sbjct 100 ACCAGACTTGGGCTTGGTTGATCACCCAGGGTTCTCT-CTGGTGCGCTCTTC--CGGTCC 156 Query 264 AGGCCAGCATCAGCTCGGGCGGTCGGATAAAGGCCCCGGGAATGTGGCCCCCTTCGGGGG 323 ||||||||||||| | | | | |||||||| | ||||||| |||| |||| | ||| Sbjct 157 AGGCCAGCATCAGTTTGCCCCGGGGGATAAAGACGTCGGGAATCTGGCTCCCTCCAGGGA 216 Query 324 GTGTTATAGCCCGGGGTGGAATGCG 348 |||||||||||| | ||| ||| || Sbjct 217 GTGTTATAGCCCAGCGTGTAATACG 241 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079442364350