Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20virguliforme_20[genbank_20GCA_5F001680665.1_202016-07-06]
25,997 sequences; 50,938,851 total letters
Query= AAMG01000941.1
Length=299
Score E
Sequences producing significant alignments: (Bits) Value
seq16 497 2e-138
seq938 131 3e-28
seq23665 116 6e-24
>seq16
Length=2124
Score = 497 bits (550), Expect = 2e-138
Identities = 288/295 (98%), Gaps = 1/295 (0%)
Strand=Plus/Minus
Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60
|||||||| |||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 1221 TACTAAGCTGAATTACCATTGCGGCGA-GGTCATCAGTAGGGTAAAACTAACCTGTCTCA 1163
Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1162 CGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 1103
Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1102 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTAT 1043
Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1042 GAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 983
Query 241 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCAC 295
||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 982 CAAATGTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCAC 928
>seq938
Length=7672
Score = 131 bits (144), Expect = 3e-28
Identities = 84/91 (92%), Gaps = 2/91 (2%)
Strand=Plus/Plus
Query 207 ATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGA--GGGACTAAAGGATC 264
|||||||||||||||||||||||||||||||||||| || ||| ||||||||||||||
Sbjct 1620 ATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAGATGTCGCCGGGGACTAAAGGATC 1679
Query 265 GATAGGCCACACTTTCATGGTTTGTATTCAC 295
|||| |||||||||||||||||| |||||||
Sbjct 1680 GATAAGCCACACTTTCATGGTTTATATTCAC 1710
>seq23665
Length=200
Score = 116 bits (128), Expect = 6e-24
Identities = 71/74 (96%), Gaps = 1/74 (1%)
Strand=Plus/Plus
Query 19 TTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGC 78
||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 120 TTGCGGCGA-GGTCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGC 178
Query 79 TCACGTTCCCTATT 92
||||||||||||||
Sbjct 179 TCACGTTCCCTATT 192
Score = 104 bits (114), Expect = 4e-20
Identities = 67/72 (93%), Gaps = 1/72 (1%)
Strand=Plus/Minus
Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60
|||||||| |||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 87 TACTAAGCTGAATTACCATTGCGGCGA-GGTCATCAGTAGGGTAAAACTAACCTGTCTCA 29
Query 61 TGACGGTCTAAA 72
|||||||| ||
Sbjct 28 CGACGGTCTCAA 17
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 854177881632
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |