Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20virguliforme_20[genbank_20GCA_5F001680665.1_202016-07-06] 25,997 sequences; 50,938,851 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq16 623 3e-176 seq25647 190 7e-46 seq97 178 4e-42 seq9991 93.3 1e-16 >seq16 Length=2124 Score = 623 bits (690), Expect = 3e-176 Identities = 400/435 (92%), Gaps = 5/435 (1%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| ||||| |||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 896 CTTTTGTTCTACTGGAGATTTCTGTTCTCCATGAGCCCCCCTTAGGACACCTGCGTTATG 837 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || Sbjct 836 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCAACCCGGGTC 777 Query 127 GGCCCGCGAAGGACCTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCATTGA 186 ||||||||||||||||||| |||||| ||| || || |||| |||||||||||| Sbjct 776 GGCCCGCGAAGGACCTTAAAACCAGAAGTTGGACGA--AAATCCAGCCCCGCTTCATTGA 719 Query 187 TTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTA 246 ||||||||||||| ||| | ||||||||||||||| |||||||| |||||||| || Sbjct 718 ATAAGTAAAAAAACAATAGGAGTAGTGGTATTTCACCGGCGCCGAA---GCTCCCACCTA 662 Query 247 TTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTC 306 ||||||||||| | ||| |||||||| ||| ||||||||||||||||||||||||||| Sbjct 661 TTCTACACCTCCTATGTCTTTTCACAATGTCAAACTAGAGTCAAGCTCAACAGGGTCTTC 602 Query 307 TTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATA 366 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 601 TTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATA 542 Query 367 GGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATT 426 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 541 GGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATT 482 Query 427 TGGCTACCTTAAGAG 441 ||||||||||||||| Sbjct 481 TGGCTACCTTAAGAG 467 Score = 136 bits (150), Expect = 1e-29 Identities = 77/78 (99%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 441 GAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTC 500 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 79 GAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTACTTCACTTTGACATTC 20 Query 501 AGAGCACTGGGCAGAAAT 518 |||||||||||||||||| Sbjct 19 AGAGCACTGGGCAGAAAT 2 >seq25647 Length=245 Score = 190 bits (210), Expect = 7e-46 Identities = 114/117 (97%), Gaps = 2/117 (2%) Strand=Plus/Plus Query 304 TTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAG 363 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 13 TTCTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAG 72 Query 364 ATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCA-CTAATTAGATGACG 419 |||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| Sbjct 73 ATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCATCTAATTAG-TGACG 128 Score = 168 bits (186), Expect = 2e-39 Identities = 93/93 (100%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 327 AGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTT 386 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 202 AGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTT 143 Query 387 AATCCATTCATGCGCGTCACTAATTAGATGACG 419 ||||||||||||||||||||||||||||||||| Sbjct 142 AATCCATTCATGCGCGTCACTAATTAGATGACG 110 Score = 84.2 bits (92), Expect = 7e-14 Identities = 46/46 (100%), Gaps = 0/46 (0%) Strand=Plus/Plus Query 352 GCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCAT 397 |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 200 GCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCAT 245 >seq97 Length=450 Score = 178 bits (196), Expect = 4e-42 Identities = 101/103 (98%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 441 GAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTC 500 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 66 GAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTACTTCACTTTGACATTC 125 Query 501 AGAGCACTGGGCAGAAATCACATTGCGTCAACATCACTTTCTG 543 ||||||||||||||||||||||||||||||||| ||||||||| Sbjct 126 AGAGCACTGGGCAGAAATCACATTGCGTCAACACCACTTTCTG 168 >seq9991 Length=1401 Score = 93.3 bits (102), Expect = 1e-16 Identities = 76/92 (83%), Gaps = 4/92 (4%) Strand=Plus/Minus Query 6 TCTTTTGCTCTACA----GGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCG 61 ||||||| |||||| | |||||||||||||| |||| |||| |||||||||||||| Sbjct 729 TCTTTTGTTCTACATATGGAAGATTTCTGTTCTCGATGAACCCCCTTTAGGACACCTGCG 670 Query 62 TTATGGTTTAACAGATGTGCCGCCCCAGCCAA 93 |||| |||| | |||| | |||||||||||| Sbjct 669 TTATAGTTTGATAGATTTATCGCCCCAGCCAA 638 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1634774897056