Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20virguliforme_20[genbank_20GCA_5F001680665.1_202016-07-06] 25,997 sequences; 50,938,851 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq2 735 0.0 seq21279 118 3e-24 seq25463 102 2e-19 >seq2 Length=6014 Score = 735 bits (814), Expect = 0.0 Identities = 466/504 (92%), Gaps = 1/504 (0%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2126 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 2067 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 2066 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTAGTAGCCGTT 2007 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 ||||||||||| ||||||| |||| |||||| | ||||||||||||| |||||| | Sbjct 2006 TCTCAGGCTCCTTCTCCGGGGTCGAGCCCTAACCCTCCGTTACCCGTTGCAACCATGTTT 1947 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 ||||| || || | |||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1946 GGCCAATACCCAAACATCGAAAGTTGATAGGGAAGAAATTTGAATGAACCATCGCCGGCG 1887 Query 241 CAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGT 300 ||||||||||||||||| |||||| ||||||||||| ||||||| ||||| ||||| Sbjct 1886 CAAGGCCATGCGATTCGAGGAGTTATCATGAATCACCAGTAAGCCCCGGAGGGCATTGGT 1827 Query 301 TTTTTATCTAATAAATACACCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCTCTAG 360 |||| |||||||||||||| |||||||||||| ||| ||||||||||||||||||||||| Sbjct 1826 TTTTAATCTAATAAATACATCCCTTCCGAAGTTGGGATTTTTAGCATGTATTAGCTCTAG 1767 Query 361 AATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGA 420 |||||||||||||||||| |||||| |||||||||||||||||||||||| || |||||| Sbjct 1766 AATTACCACGGTTATCCAAGTAGTAGGGTACTATCAAATAAACGATAACTTATATAATGA 1707 Query 421 GCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTG 480 ||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1706 GCCGTTCGCAGTTTCGCTGTATA-ATTGCTTATACTTAGACATGCATGGCTTAATCTTTG 1648 Query 481 AGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||| Sbjct 1647 AGACAAGCATATGACTACTGGCAG 1624 >seq21279 Length=222 Score = 118 bits (130), Expect = 3e-24 Identities = 70/72 (97%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 433 TTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATAT 492 ||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 TTCGCTGTATA-ATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATAT 59 Query 493 GACTACTGGCAG 504 |||||||||||| Sbjct 60 GACTACTGGCAG 71 Score = 114 bits (126), Expect = 4e-23 Identities = 67/68 (99%), Gaps = 1/68 (1%) Strand=Plus/Minus Query 437 CTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACT 496 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 174 CTGTATA-ATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACT 116 Query 497 ACTGGCAG 504 |||||||| Sbjct 115 ACTGGCAG 108 Score = 87.8 bits (96), Expect = 5e-15 Identities = 53/55 (96%), Gaps = 2/55 (4%) Strand=Plus/Plus Query 450 TTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 167 TTATAC--AGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 219 >seq25463 Length=205 Score = 102 bits (112), Expect = 2e-19 Identities = 79/93 (85%), Gaps = 1/93 (1%) Strand=Plus/Minus Query 253 ATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGTTTTTTATCTAAT 312 ||||| |||||| ||||||||||| ||||||| ||||| ||||||||| ||||||| Sbjct 142 ATTCGAGGAGTTATCATGAATCACCAGTAAGCCCCGGAGGGCATTGGTTTTTAATCTAAT 83 Query 313 AAATACACCCCTTCCGAAGTCGGGGTTT-TTAG 344 ||||||| |||||||||||| ||| ||| |||| Sbjct 82 AAATACATCCCTTCCGAAGTTGGGATTTATTAG 50 Score = 100 bits (110), Expect = 9e-19 Identities = 64/70 (91%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 357 CTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTA 416 || ||||||||||||||||||| |||||| |||||||||||||||||||||||| || || Sbjct 136 CTCGAATTACCACGGTTATCCAAGTAGTAGGGTACTATCAAATAAACGATAACTTATATA 195 Query 417 ATGAGCCATT 426 ||||||| || Sbjct 196 ATGAGCCGTT 205 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510007341312