Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20virguliforme_20[genbank_20GCA_5F001680665.1_202016-07-06]
25,997 sequences; 50,938,851 total letters
Query= AAMG01002244.1
Length=504
Score E
Sequences producing significant alignments: (Bits) Value
seq2 735 0.0
seq21279 118 3e-24
seq25463 102 2e-19
>seq2
Length=6014
Score = 735 bits (814), Expect = 0.0
Identities = 466/504 (92%), Gaps = 1/504 (0%)
Strand=Plus/Minus
Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2126 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 2067
Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2066 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTAGTAGCCGTT 2007
Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180
||||||||||| ||||||| |||| |||||| | ||||||||||||| |||||| |
Sbjct 2006 TCTCAGGCTCCTTCTCCGGGGTCGAGCCCTAACCCTCCGTTACCCGTTGCAACCATGTTT 1947
Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240
||||| || || | |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1946 GGCCAATACCCAAACATCGAAAGTTGATAGGGAAGAAATTTGAATGAACCATCGCCGGCG 1887
Query 241 CAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGT 300
||||||||||||||||| |||||| ||||||||||| ||||||| ||||| |||||
Sbjct 1886 CAAGGCCATGCGATTCGAGGAGTTATCATGAATCACCAGTAAGCCCCGGAGGGCATTGGT 1827
Query 301 TTTTTATCTAATAAATACACCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCTCTAG 360
|||| |||||||||||||| |||||||||||| ||| |||||||||||||||||||||||
Sbjct 1826 TTTTAATCTAATAAATACATCCCTTCCGAAGTTGGGATTTTTAGCATGTATTAGCTCTAG 1767
Query 361 AATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGA 420
|||||||||||||||||| |||||| |||||||||||||||||||||||| || ||||||
Sbjct 1766 AATTACCACGGTTATCCAAGTAGTAGGGTACTATCAAATAAACGATAACTTATATAATGA 1707
Query 421 GCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTG 480
||| ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1706 GCCGTTCGCAGTTTCGCTGTATA-ATTGCTTATACTTAGACATGCATGGCTTAATCTTTG 1648
Query 481 AGACAAGCATATGACTACTGGCAG 504
||||||||||||||||||||||||
Sbjct 1647 AGACAAGCATATGACTACTGGCAG 1624
>seq21279
Length=222
Score = 118 bits (130), Expect = 3e-24
Identities = 70/72 (97%), Gaps = 1/72 (1%)
Strand=Plus/Plus
Query 433 TTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATAT 492
||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TTCGCTGTATA-ATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATAT 59
Query 493 GACTACTGGCAG 504
||||||||||||
Sbjct 60 GACTACTGGCAG 71
Score = 114 bits (126), Expect = 4e-23
Identities = 67/68 (99%), Gaps = 1/68 (1%)
Strand=Plus/Minus
Query 437 CTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACT 496
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 174 CTGTATA-ATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACT 116
Query 497 ACTGGCAG 504
||||||||
Sbjct 115 ACTGGCAG 108
Score = 87.8 bits (96), Expect = 5e-15
Identities = 53/55 (96%), Gaps = 2/55 (4%)
Strand=Plus/Plus
Query 450 TTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504
|||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 167 TTATAC--AGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 219
>seq25463
Length=205
Score = 102 bits (112), Expect = 2e-19
Identities = 79/93 (85%), Gaps = 1/93 (1%)
Strand=Plus/Minus
Query 253 ATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGTTTTTTATCTAAT 312
||||| |||||| ||||||||||| ||||||| ||||| ||||||||| |||||||
Sbjct 142 ATTCGAGGAGTTATCATGAATCACCAGTAAGCCCCGGAGGGCATTGGTTTTTAATCTAAT 83
Query 313 AAATACACCCCTTCCGAAGTCGGGGTTT-TTAG 344
||||||| |||||||||||| ||| ||| ||||
Sbjct 82 AAATACATCCCTTCCGAAGTTGGGATTTATTAG 50
Score = 100 bits (110), Expect = 9e-19
Identities = 64/70 (91%), Gaps = 0/70 (0%)
Strand=Plus/Plus
Query 357 CTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTA 416
|| ||||||||||||||||||| |||||| |||||||||||||||||||||||| || ||
Sbjct 136 CTCGAATTACCACGGTTATCCAAGTAGTAGGGTACTATCAAATAAACGATAACTTATATA 195
Query 417 ATGAGCCATT 426
||||||| ||
Sbjct 196 ATGAGCCGTT 205
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1510007341312
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |