Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gaeumannomyces_20sp._20JS-464_20[genbank_20GCA_5F002197995.1_202017- 06-19] 80 sequences; 53,151,282 total letters Query= AAMG01000190.1 Length=117 Score E Sequences producing significant alignments: (Bits) Value seq10 143 1e-32 seq45 87.8 1e-15 >seq10 Length=40229 Score = 143 bits (158), Expect = 1e-32 Identities = 104/118 (88%), Gaps = 2/118 (2%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGA-TTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCC 59 ||||||| | |||| | |||| ||||||||||||||| ||||||| |||||| |||| Sbjct 1942 GAACCCAGAAACTTGTACTTTCGTGTAAGGTGCCGAGCGGGTCAAAAA-ATAACACCGCC 2000 Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||||||||||||||||||| |||||||||||| ||||||||||||||| ||||| Sbjct 2001 CGATCCCTAGTCGGCATAGTTTATGGTTAAGACTACAACGGTATCTGATCGTTTTCGA 2058 Score = 143 bits (158), Expect = 1e-32 Identities = 104/118 (88%), Gaps = 2/118 (2%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGA-TTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCC 59 ||||||| | |||| | |||| ||||||||||||||| ||||||| |||||| |||| Sbjct 9484 GAACCCAGAAACTTGTACTTTCGTGTAAGGTGCCGAGCGGGTCAAAAA-ATAACACCGCC 9542 Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||||||||||||||||||| |||||||||||| ||||||||||||||| ||||| Sbjct 9543 CGATCCCTAGTCGGCATAGTTTATGGTTAAGACTACAACGGTATCTGATCGTTTTCGA 9600 Score = 143 bits (158), Expect = 1e-32 Identities = 104/118 (88%), Gaps = 2/118 (2%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGA-TTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCC 59 ||||||| | |||| | |||| ||||||||||||||| ||||||| |||||| |||| Sbjct 18705 GAACCCAGAAACTTGTACTTTCGTGTAAGGTGCCGAGCGGGTCAAAAA-ATAACACCGCC 18763 Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||||||||||||||||||| |||||||||||| ||||||||||||||| ||||| Sbjct 18764 CGATCCCTAGTCGGCATAGTTTATGGTTAAGACTACAACGGTATCTGATCGTTTTCGA 18821 Score = 143 bits (158), Expect = 1e-32 Identities = 104/118 (88%), Gaps = 2/118 (2%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGA-TTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCC 59 ||||||| | |||| | |||| ||||||||||||||| ||||||| |||||| |||| Sbjct 36309 GAACCCAGAAACTTGTACTTTCGTGTAAGGTGCCGAGCGGGTCAAAAA-ATAACACCGCC 36367 Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||||||||||||||||||| |||||||||||| ||||||||||||||| ||||| Sbjct 36368 CGATCCCTAGTCGGCATAGTTTATGGTTAAGACTACAACGGTATCTGATCGTTTTCGA 36425 >seq45 Length=5506958 Score = 87.8 bits (96), Expect = 1e-15 Identities = 67/78 (86%), Gaps = 1/78 (1%) Strand=Plus/Minus Query 29 GTGCCGAGCGAGTCAAAATGATAACATCGCCCGATCCCTAGTCGGCATAGTTTACGGTTA 88 |||||||||| ||||||| |||||| | ||||||||||||||||||||||||| ||||| Sbjct 2770714 GTGCCGAGCGGGTCAAAAA-ATAACACCACCCGATCCCTAGTCGGCATAGTTTATGGTTA 2770656 Query 89 AGACTACGACGGTATCTG 106 ||| | | | ||||||| Sbjct 2770655 AGAATTCAAGAGTATCTG 2770638 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 278399791200