Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gaeumannomyces_20sp._20JS-464_20[genbank_20GCA_5F002197995.1_202017- 06-19] 80 sequences; 53,151,282 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq10 356 4e-96 seq16 84.2 3e-14 >seq10 Length=40229 Score = 356 bits (394), Expect = 4e-96 Identities = 241/266 (91%), Gaps = 3/266 (1%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1186 ACTCGCTGGCTGTGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 1245 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 |||||||||||||||||||||||| |||| || ||| ||||||||||||||||||| || Sbjct 1246 CCTGTTATTGCCTCAAACTTCCATCGGCTTGA-GCCGATAGTCCCTCTAAGAAGCCTGCG 1304 Query 122 ACCAACCATAGTCGATG-GGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTA 180 | ||| || ||| | |||||||||||||||||||||||||||||||||||| ||||| Sbjct 1305 CGCCGCCAAAG-CGACGCGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGCAATTA 1363 Query 181 ACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGA 240 | ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| Sbjct 1364 AGCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCACAAAATCAAGA 1423 Query 241 AAGAGCTATCAATCTGTCCTCCCTCG 266 ||||||| |||||||||| ||||| Sbjct 1424 AAGAGCTCTCAATCTGTCAATCCTCG 1449 Score = 356 bits (394), Expect = 4e-96 Identities = 241/266 (91%), Gaps = 3/266 (1%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 8727 ACTCGCTGGCTGTGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 8786 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 |||||||||||||||||||||||| |||| || ||| ||||||||||||||||||| || Sbjct 8787 CCTGTTATTGCCTCAAACTTCCATCGGCTTGA-GCCGATAGTCCCTCTAAGAAGCCTGCG 8845 Query 122 ACCAACCATAGTCGATG-GGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTA 180 | ||| || ||| | |||||||||||||||||||||||||||||||||||| ||||| Sbjct 8846 CGCCGCCAAAG-CGACGCGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGCAATTA 8904 Query 181 ACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGA 240 | ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| Sbjct 8905 AGCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCACAAAATCAAGA 8964 Query 241 AAGAGCTATCAATCTGTCCTCCCTCG 266 ||||||| |||||||||| ||||| Sbjct 8965 AAGAGCTCTCAATCTGTCAATCCTCG 8990 Score = 356 bits (394), Expect = 4e-96 Identities = 241/266 (91%), Gaps = 3/266 (1%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 17949 ACTCGCTGGCTGTGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 18008 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 |||||||||||||||||||||||| |||| || ||| ||||||||||||||||||| || Sbjct 18009 CCTGTTATTGCCTCAAACTTCCATCGGCTTGA-GCCGATAGTCCCTCTAAGAAGCCTGCG 18067 Query 122 ACCAACCATAGTCGATG-GGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTA 180 | ||| || ||| | |||||||||||||||||||||||||||||||||||| ||||| Sbjct 18068 CGCCGCCAAAG-CGACGCGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGCAATTA 18126 Query 181 ACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGA 240 | ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| Sbjct 18127 AGCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCACAAAATCAAGA 18186 Query 241 AAGAGCTATCAATCTGTCCTCCCTCG 266 ||||||| |||||||||| ||||| Sbjct 18187 AAGAGCTCTCAATCTGTCAATCCTCG 18212 Score = 356 bits (394), Expect = 4e-96 Identities = 241/266 (91%), Gaps = 3/266 (1%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 35553 ACTCGCTGGCTGTGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 35612 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 |||||||||||||||||||||||| |||| || ||| ||||||||||||||||||| || Sbjct 35613 CCTGTTATTGCCTCAAACTTCCATCGGCTTGA-GCCGATAGTCCCTCTAAGAAGCCTGCG 35671 Query 122 ACCAACCATAGTCGATG-GGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTA 180 | ||| || ||| | |||||||||||||||||||||||||||||||||||| ||||| Sbjct 35672 CGCCGCCAAAG-CGACGCGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGCAATTA 35730 Query 181 ACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGA 240 | ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| Sbjct 35731 AGCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCACAAAATCAAGA 35790 Query 241 AAGAGCTATCAATCTGTCCTCCCTCG 266 ||||||| |||||||||| ||||| Sbjct 35791 AAGAGCTCTCAATCTGTCAATCCTCG 35816 Score = 241 bits (266), Expect = 2e-61 Identities = 168/187 (90%), Gaps = 3/187 (2%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 27172 ACTCGCTGGCTGTGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 27231 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 |||||||||||||||||||||||| |||| | |||| ||||||||||||||||||| || Sbjct 27232 CCTGTTATTGCCTCAAACTTCCATCGGCTTG-AGCCGATAGTCCCTCTAAGAAGCCTGCG 27290 Query 122 ACCAACCATAGTCGATG-GGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTA 180 | ||| || ||| | |||||||||||||||||||||||||||||||||||| ||||| Sbjct 27291 CGCCGCCAAAG-CGACGCGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGCAATTA 27349 Query 181 ACCAGAC 187 | ||||| Sbjct 27350 AGCAGAC 27356 >seq16 Length=18714 Score = 84.2 bits (92), Expect = 3e-14 Identities = 197/266 (74%), Gaps = 41/266 (15%) Strand=Plus/Minus Query 21 GTAGCGCGCG-TGCGGCCCAGAACA-TC-TAAGGGCA-TCACAGACC----TGTTAT-TG 71 |||||||||| |||||||||||||| || |||||||| ||||||||| ||| | || Sbjct 4737 GTAGCGCGCGGTGCGGCCCAGAACAGTCGTAAGGGCAGTCACAGACCGTGGTGTAGTGTG 4678 Query 72 CC-TCAAACTT--CCATT-GGC-TGGAAGCCAA-TAG-TCCC-TC-TAAGAAGCCAGCCA 122 || |||||| | ||| | ||| || |||| | ||| |||| || ||||||||| | Sbjct 4677 CCGTCAAACGTGTCCAGTCGGCGTGTGAGCCGAGTAGGTCCCGTCGTAAGAAGCCGTGCG 4618 Query 123 C-CAACCATAGTCGATG-GGGC----TATTTAGCAGGTT---AAGGTC-TCGTTC----- 167 | | ||| || ||| | |||| | | ||||||| | | |||| ||| | Sbjct 4617 CGCCGCCAAAG-CGACGCGGGCGTAGTGTGTAGCAGGGTGTAAGGGTCGTCGGTGTCGGT 4559 Query 168 GTTATCGGAATT--AACCAGACAAA-TCAC-TCCACCAAC-TAAGAACGGCCA-TGCACC 221 || ||| || | || |||||||| |||| ||||||||| |||||||||||| |||||| Sbjct 4558 GTAGTCGCAAGTGTAAGCAGACAAAGTCACGTCCACCAACGTAAGAACGGCCAGTGCACC 4499 Query 222 ACCACCCATAGAA-TCAAGAAAGAGC 246 |||||||| | || |||||||||||| Sbjct 4498 ACCACCCACAAAAGTCAAGAAAGAGC 4473 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796799382480