Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gaeumannomyces_20sp._20JS-464_20[genbank_20GCA_5F002197995.1_202017- 06-19] 80 sequences; 53,151,282 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq10 446 3e-123 seq16 96.9 7e-18 seq1 82.4 1e-13 >seq10 Length=40229 Score = 446 bits (494), Expect = 3e-123 Identities = 285/309 (92%), Gaps = 2/309 (1%) Strand=Plus/Minus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 79 || ||||||||||||||||||||||||| | ||||||||||| ||| |||||||||| Sbjct 1350 GAACGAGACCTTAACCTGCTAAATAGCCCGCGTCGCTTTGGCGGCGCGCAGGCTTCTTAG 1291 Query 80 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTA 139 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1290 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTA 1231 Query 140 GATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCG 199 ||||||||||||||||||||||||||||||||| ||||| ||||| | | ||||||||| Sbjct 1230 GATGTTCTGGGCCGCACGCGCGCTACACTGACACAGCCAGCGAGTCCTT--CCTTGGCCG 1173 Query 200 GAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTG 259 ||| | |||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1172 AGAGGCCCGGGTAATCTTGTTAAACTGTGTCGTGCTGGGGATAGAGCATTGCAATTATTG 1113 Query 260 CTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTG 319 |||||||||||||||| |||||||||||| ||||||||| |||||||||||||||||| Sbjct 1112 CTCTTCAACGAGGAATCCCTAGTAAGCGCAAGTCATCAGCTTGCGTTGATTACGTCCCTG 1053 Query 320 CCCTTTGTA 328 ||||||||| Sbjct 1052 CCCTTTGTA 1044 Score = 446 bits (494), Expect = 3e-123 Identities = 285/309 (92%), Gaps = 2/309 (1%) Strand=Plus/Minus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 79 || ||||||||||||||||||||||||| | ||||||||||| ||| |||||||||| Sbjct 8891 GAACGAGACCTTAACCTGCTAAATAGCCCGCGTCGCTTTGGCGGCGCGCAGGCTTCTTAG 8832 Query 80 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTA 139 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 8831 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTA 8772 Query 140 GATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCG 199 ||||||||||||||||||||||||||||||||| ||||| ||||| | | ||||||||| Sbjct 8771 GATGTTCTGGGCCGCACGCGCGCTACACTGACACAGCCAGCGAGTCCTT--CCTTGGCCG 8714 Query 200 GAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTG 259 ||| | |||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 8713 AGAGGCCCGGGTAATCTTGTTAAACTGTGTCGTGCTGGGGATAGAGCATTGCAATTATTG 8654 Query 260 CTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTG 319 |||||||||||||||| |||||||||||| ||||||||| |||||||||||||||||| Sbjct 8653 CTCTTCAACGAGGAATCCCTAGTAAGCGCAAGTCATCAGCTTGCGTTGATTACGTCCCTG 8594 Query 320 CCCTTTGTA 328 ||||||||| Sbjct 8593 CCCTTTGTA 8585 Score = 446 bits (494), Expect = 3e-123 Identities = 285/309 (92%), Gaps = 2/309 (1%) Strand=Plus/Minus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 79 || ||||||||||||||||||||||||| | ||||||||||| ||| |||||||||| Sbjct 18113 GAACGAGACCTTAACCTGCTAAATAGCCCGCGTCGCTTTGGCGGCGCGCAGGCTTCTTAG 18054 Query 80 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTA 139 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 18053 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTA 17994 Query 140 GATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCG 199 ||||||||||||||||||||||||||||||||| ||||| ||||| | | ||||||||| Sbjct 17993 GATGTTCTGGGCCGCACGCGCGCTACACTGACACAGCCAGCGAGTCCTT--CCTTGGCCG 17936 Query 200 GAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTG 259 ||| | |||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 17935 AGAGGCCCGGGTAATCTTGTTAAACTGTGTCGTGCTGGGGATAGAGCATTGCAATTATTG 17876 Query 260 CTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTG 319 |||||||||||||||| |||||||||||| ||||||||| |||||||||||||||||| Sbjct 17875 CTCTTCAACGAGGAATCCCTAGTAAGCGCAAGTCATCAGCTTGCGTTGATTACGTCCCTG 17816 Query 320 CCCTTTGTA 328 ||||||||| Sbjct 17815 CCCTTTGTA 17807 Score = 446 bits (494), Expect = 3e-123 Identities = 285/309 (92%), Gaps = 2/309 (1%) Strand=Plus/Minus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 79 || ||||||||||||||||||||||||| | ||||||||||| ||| |||||||||| Sbjct 27336 GAACGAGACCTTAACCTGCTAAATAGCCCGCGTCGCTTTGGCGGCGCGCAGGCTTCTTAG 27277 Query 80 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTA 139 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 27276 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTA 27217 Query 140 GATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCG 199 ||||||||||||||||||||||||||||||||| ||||| ||||| | | ||||||||| Sbjct 27216 GATGTTCTGGGCCGCACGCGCGCTACACTGACACAGCCAGCGAGTCCTT--CCTTGGCCG 27159 Query 200 GAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTG 259 ||| | |||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 27158 AGAGGCCCGGGTAATCTTGTTAAACTGTGTCGTGCTGGGGATAGAGCATTGCAATTATTG 27099 Query 260 CTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTG 319 |||||||||||||||| |||||||||||| ||||||||| |||||||||||||||||| Sbjct 27098 CTCTTCAACGAGGAATCCCTAGTAAGCGCAAGTCATCAGCTTGCGTTGATTACGTCCCTG 27039 Query 320 CCCTTTGTA 328 ||||||||| Sbjct 27038 CCCTTTGTA 27030 Score = 446 bits (494), Expect = 3e-123 Identities = 285/309 (92%), Gaps = 2/309 (1%) Strand=Plus/Minus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 79 || ||||||||||||||||||||||||| | ||||||||||| ||| |||||||||| Sbjct 35717 GAACGAGACCTTAACCTGCTAAATAGCCCGCGTCGCTTTGGCGGCGCGCAGGCTTCTTAG 35658 Query 80 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTA 139 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 35657 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTA 35598 Query 140 GATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCG 199 ||||||||||||||||||||||||||||||||| ||||| ||||| | | ||||||||| Sbjct 35597 GATGTTCTGGGCCGCACGCGCGCTACACTGACACAGCCAGCGAGTCCTT--CCTTGGCCG 35540 Query 200 GAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTG 259 ||| | |||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 35539 AGAGGCCCGGGTAATCTTGTTAAACTGTGTCGTGCTGGGGATAGAGCATTGCAATTATTG 35480 Query 260 CTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTG 319 |||||||||||||||| |||||||||||| ||||||||| |||||||||||||||||| Sbjct 35479 CTCTTCAACGAGGAATCCCTAGTAAGCGCAAGTCATCAGCTTGCGTTGATTACGTCCCTG 35420 Query 320 CCCTTTGTA 328 ||||||||| Sbjct 35419 CCCTTTGTA 35411 >seq16 Length=18714 Score = 96.9 bits (106), Expect = 7e-18 Identities = 244/329 (74%), Gaps = 54/329 (16%) Strand=Plus/Plus Query 53 CGCTTTGGCGGGTCGC-CGGCTTCTTA-GA-GGGAC-TA-TCGGCTCAA--GCCGA-TGG 104 ||||||||||| ||| |||||||||| || ||||| || |||||||| ||||| ||| Sbjct 15902 CGCTTTGGCGGCGCGCACGGCTTCTTACGACGGGACCTACTCGGCTCACACGCCGACTGG 15961 Query 105 AA--GTTTGA-GGCA----ATAACA-GGTCTGTGA-TGCCCTTA-GA-TGTTCTGGGCCG 153 | |||||| |||| | | || ||||||||| |||||||| || |||||||||||| Sbjct 15962 ACACGTTTGACGGCACACTACACCACGGTCTGTGACTGCCCTTACGACTGTTCTGGGCCG 16021 Query 154 CAC-GCGCGCTACA--CTGACAGA---GCCAA-CGAGTTCATCACCTTGGCCG--GAAGG 204 ||| ||||||||| ||||| |||| ||| || | ||||||||| || || Sbjct 16022 CACCGCGCGCTACCACCTGACCACCACGCCACGCGACGTCCTT-CCTTGGCCGACGACGG 16080 Query 205 TCTGGGTAA--TCTTGTTAAACTC---TGTCGTGCTGGGGA-TA-GA-GCA-TTGCAA-- 253 | ||||| |||||||| || | |||||||||||||| || || ||| ||||| Sbjct 16081 CCCGGGTACACTCTTGTTACACACCTGTGTCGTGCTGGGGACTACGACGCACTTGCACAC 16140 Query 254 TTA-TTGCTCTTCAA--CGAGGAA---TGCCTA-GTAAGCGCGT---GTCA-TCA-GCAC 301 ||| |||||||||| ||| | | | |||| ||| |||| |||| ||| || Sbjct 16141 TTACTTGCTCTTCACACCGACGGACACTCCCTACGTACACGCGACACGTCACTCACGCTT 16200 Query 302 GCGTTGA-TTAC-GTCCCTGCCCTTTGTA 328 ||||||| |||| |||||||||||||||| Sbjct 16201 GCGTTGACTTACCGTCCCTGCCCTTTGTA 16229 Score = 95.1 bits (104), Expect = 2e-17 Identities = 244/330 (74%), Gaps = 55/330 (17%) Strand=Plus/Plus Query 53 CGCTTTGGCGGGTCGC-CGGCTTCTTA-GA-GGGAC-TA-TCGGCTCAA--GCCGA-TGG 104 ||||||||||| ||| |||||||||| || ||||| || |||||||| ||||| ||| Sbjct 4605 CGCTTTGGCGGCGCGCACGGCTTCTTACGACGGGACCTACTCGGCTCACACGCCGACTGG 4664 Query 105 AA--GTTTGA-GGCA----ATAACA-GGTCTGTGA-TGCCCTTA-GA-TGTTCTGGGCCG 153 | |||||| |||| | | || ||||||||| |||||||| || |||||||||||| Sbjct 4665 ACACGTTTGACGGCACACTACACCACGGTCTGTGACTGCCCTTACGACTGTTCTGGGCCG 4724 Query 154 CAC-GCGCGCTACA--CTGACAGA---GCCAA-CGAGTTCATCACCTTGGCCG--GAAGG 204 ||| ||||||||| ||||| |||| ||| || | ||||||||| || || Sbjct 4725 CACCGCGCGCTACCACCTGACCACCACGCCACGCGACGTCCTT-CCTTGGCCGACGACGG 4783 Query 205 TCTGGGTAA--TCTTGTTAAACTC---TGTCGTGCTGGGGA-TA-GA-GCA-TTGCAA-- 253 | ||||| |||||||| || | |||||||||||||| || || ||| ||||| Sbjct 4784 CCCGGGTACACTCTTGTTACACACCTGTGTCGTGCTGGGGACTACGACGCACTTGCACAC 4843 Query 254 TTA-TTGCTCTTCAA--CGAGGAA---TGCCTA-GTAAGCGCGT----GTCA-TCA-GCA 300 ||| |||||||||| ||| | | | |||| ||| |||| |||| ||| || Sbjct 4844 TTACTTGCTCTTCACACCGACGGACACTCCCTACGTACACGCGCACACGTCACTCACGCT 4903 Query 301 CGCGTTGA-TTAC-GTCCCTGCCCTTTGTA 328 ||||||| |||| |||||||||||||||| Sbjct 4904 TGCGTTGACTTACCGTCCCTGCCCTTTGTA 4933 >seq1 Length=15654088 Score = 82.4 bits (90), Expect = 1e-13 Identities = 70/85 (82%), Gaps = 1/85 (1%) Strand=Plus/Minus Query 240 ATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGC 299 ||| ||||||||||||||||||||||||||| |||| || || || ||| |||||||| Sbjct 13834355 ATATAGCATTGCAATTATTGCTCTTCAACGAAGAAT-CCCAGGAAACGCAAATCATCAGC 13834297 Query 300 ACGCGTTGATTACGTCCCTGCCCTT 324 | ||| || ||| |||||||||| Sbjct 13834296 TTGTGTTAATCACGCCCCTGCCCTT 13834272 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947199242240