Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gaeumannomyces_20sp._20JS-464_20[genbank_20GCA_5F002197995.1_202017- 06-19] 80 sequences; 53,151,282 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq55 295 1e-77 seq10 241 2e-61 >seq55 Length=2475 Score = 295 bits (326), Expect = 1e-77 Identities = 240/282 (85%), Gaps = 8/282 (3%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || |||||| ||||||||||||||||||||||||||||||||| Sbjct 1146 GTACGAGAGGAACCGTTGA-TTCAGA-TAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 1089 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 ||||||| |||||||||||| |||| |||||||||||||||||||||||||||| |||| Sbjct 1088 GCCGCGACGCTACCATCTGCCGGATAATGGCTGAACGCCTCTAAGTCAGAATCCGTGCCG 1029 Query 121 GAACGGGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGGCTTC--GGCCCCGA 178 ||||| || ||| | || |||| ||||||| |||||||||||||| || |||| ||| Sbjct 1028 GAACGCGGCGATGTTGCCCCGCACGTCGTAGTTGGATACGAATAGGCCTCCGGGCCACGA 969 Query 179 ACCTTAGCAGGCCGGCAACGGGCGTCCCGCG-GAAG-CGCGGGGCGCTCAGCTGGCGGAT 236 |||| ||||||| ||| || ||| |||| | |||| | ||||| ||| |||||||||| Sbjct 968 ACCTCAGCAGGCTGGCGAC-GGCTCCCCGGGAGAAGCCCCGGGGAGCT-GGCTGGCGGAT 911 Query 237 TGCAATTTCACCATGCGCAGGGATAAATCCTTTGCAGACGAC 278 |||||| ||||| |||| ||||| |||||| |||| ||||| Sbjct 910 TGCAATGTCACCTCGCGCGGGGATGAATCCTCTGCATACGAC 869 >seq10 Length=40229 Score = 241 bits (266), Expect = 2e-61 Identities = 225/278 (81%), Gaps = 6/278 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| |||||||||||||||| |||| ||| |||||| Sbjct 6641 GTACGAGAGGAACCGCTCA-TTCAGA-TAATTGGTTTTTGCGGTTGTCCGACAGGGCAGT 6584 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 |||||||||||||||||||| |||| | ||||||||||||||||||| |||||| ||||| Sbjct 6583 GCCGCGAAGCTACCATCTGCAGGATAACGGCTGAACGCCTCTAAGTCGGAATCCTTGCCA 6524 Query 121 GAACGGGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGGCTTCGGCCCCGAAC 180 ||||| |||||| | |||| |||| | ||| |||||| ||||||||| ||||| || | Sbjct 6523 GAACGCGGTGATAC-CTCCCGCACGT-TTAGACGGATAAGAATAGGCTCCGGCCTCGTAT 6466 Query 181 CTTAGCAGGCCGGCAACGGGCGTCCCGCGGAAGCGCGGGGCGCTCAGCTGGCGGATTGCA 240 || ||||||| || | || || | |||||| |||| | | | ||| |||| | Sbjct 6465 CTCAGCAGGCGAACATCCCGCCGGCCTC-GAAGCGGCCGGCGGTGA-TTCGCGTATTGTA 6408 Query 241 ATTTCACCATGCGCAGGGATAAATCCTTTGCAGACGAC 278 ||||| || |||| ||| ||||||||||||||||||| Sbjct 6407 ATTTCGACACGCGCGGGGTTAAATCCTTTGCAGACGAC 6370 Score = 241 bits (266), Expect = 2e-61 Identities = 225/278 (81%), Gaps = 6/278 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| |||||||||||||||| |||| ||| |||||| Sbjct 14185 GTACGAGAGGAACCGCTCA-TTCAGA-TAATTGGTTTTTGCGGTTGTCCGACAGGGCAGT 14128 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 |||||||||||||||||||| |||| | ||||||||||||||||||| |||||| ||||| Sbjct 14127 GCCGCGAAGCTACCATCTGCAGGATAACGGCTGAACGCCTCTAAGTCGGAATCCTTGCCA 14068 Query 121 GAACGGGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGGCTTCGGCCCCGAAC 180 ||||| |||||| | |||| |||| | ||| |||||| ||||||||| ||||| || | Sbjct 14067 GAACGCGGTGATAC-CTCCCGCACGT-TTAGACGGATAAGAATAGGCTCCGGCCTCGTAT 14010 Query 181 CTTAGCAGGCCGGCAACGGGCGTCCCGCGGAAGCGCGGGGCGCTCAGCTGGCGGATTGCA 240 || ||||||| || | || || | |||||| |||| | | | ||| |||| | Sbjct 14009 CTCAGCAGGCGAACATCCCGCCGGCCTC-GAAGCGGCCGGCGGTGA-TTCGCGTATTGTA 13952 Query 241 ATTTCACCATGCGCAGGGATAAATCCTTTGCAGACGAC 278 ||||| || |||| ||| ||||||||||||||||||| Sbjct 13951 ATTTCGACACGCGCGGGGTTAAATCCTTTGCAGACGAC 13914 Score = 241 bits (266), Expect = 2e-61 Identities = 225/278 (81%), Gaps = 6/278 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| |||||||||||||||| |||| ||| |||||| Sbjct 23404 GTACGAGAGGAACCGCTCA-TTCAGA-TAATTGGTTTTTGCGGTTGTCCGACAGGGCAGT 23347 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 |||||||||||||||||||| |||| | ||||||||||||||||||| |||||| ||||| Sbjct 23346 GCCGCGAAGCTACCATCTGCAGGATAACGGCTGAACGCCTCTAAGTCGGAATCCTTGCCA 23287 Query 121 GAACGGGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGGCTTCGGCCCCGAAC 180 ||||| |||||| | |||| |||| | ||| |||||| ||||||||| ||||| || | Sbjct 23286 GAACGCGGTGATAC-CTCCCGCACGT-TTAGACGGATAAGAATAGGCTCCGGCCTCGTAT 23229 Query 181 CTTAGCAGGCCGGCAACGGGCGTCCCGCGGAAGCGCGGGGCGCTCAGCTGGCGGATTGCA 240 || ||||||| || | || || | |||||| |||| | | | ||| |||| | Sbjct 23228 CTCAGCAGGCGAACATCCCGCCGGCCTC-GAAGCGGCCGGCGGTGA-TTCGCGTATTGTA 23171 Query 241 ATTTCACCATGCGCAGGGATAAATCCTTTGCAGACGAC 278 ||||| || |||| ||| ||||||||||||||||||| Sbjct 23170 ATTTCGACACGCGCGGGGTTAAATCCTTTGCAGACGAC 23133 Score = 241 bits (266), Expect = 2e-61 Identities = 225/278 (81%), Gaps = 6/278 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| |||||||||||||||| |||| ||| |||||| Sbjct 31789 GTACGAGAGGAACCGCTCA-TTCAGA-TAATTGGTTTTTGCGGTTGTCCGACAGGGCAGT 31732 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 |||||||||||||||||||| |||| | ||||||||||||||||||| |||||| ||||| Sbjct 31731 GCCGCGAAGCTACCATCTGCAGGATAACGGCTGAACGCCTCTAAGTCGGAATCCTTGCCA 31672 Query 121 GAACGGGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGGCTTCGGCCCCGAAC 180 ||||| |||||| | |||| |||| | ||| |||||| ||||||||| ||||| || | Sbjct 31671 GAACGCGGTGATAC-CTCCCGCACGT-TTAGACGGATAAGAATAGGCTCCGGCCTCGTAT 31614 Query 181 CTTAGCAGGCCGGCAACGGGCGTCCCGCGGAAGCGCGGGGCGCTCAGCTGGCGGATTGCA 240 || ||||||| || | || || | |||||| |||| | | | ||| |||| | Sbjct 31613 CTCAGCAGGCGAACATCCCGCCGGCCTC-GAAGCGGCCGGCGGTGA-TTCGCGTATTGTA 31556 Query 241 ATTTCACCATGCGCAGGGATAAATCCTTTGCAGACGAC 278 ||||| || |||| ||| ||||||||||||||||||| Sbjct 31555 ATTTCGACACGCGCGGGGTTAAATCCTTTGCAGACGAC 31518 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 819199365120