Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gaeumannomyces_20sp._20JS-464_20[genbank_20GCA_5F002197995.1_202017- 06-19] 80 sequences; 53,151,282 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq1 356 2e-93 seq12 116 3e-21 >seq1 Length=15654088 Score = 356 bits (394), Expect = 2e-93 Identities = 666/970 (69%), Gaps = 9/970 (1%) Strand=Plus/Plus Query 65993 ACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTA 66052 ||||||| || || || | || || |||||||| ||||| | ||| || || ||| Sbjct 14220568 ACAAACTGCGGCAGCGCCAACGACGCCAGGTTGCACACAGCCACCTCATCGGGCGCGAG- 14220626 Query 66053 TACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTA 66112 |||||||| || ||||||||||| ||| || ||| |||||||||| |||| || || Sbjct 14220627 TACTCGACGATCTCGGTGCACAGGTTAGAGCTGCGGATGGTGCCCAGGTTCTTCTGGTTG 14220686 Query 66113 CTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGAC 66172 |||||||| ||||| || ||||||| |||| | || |||| ||||| |||| | Sbjct 14220687 CTCTTGCGGTTGCAGTGGTCTTTGTACAGCATGAAGGGGTTGCCAGTCTCGGTCTGGGCC 14220746 Query 66173 TCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACCGTACGTACCGCCCTA-CCTTTGCG 66231 || | |||||| | ||| || | ||||| | ||| | | | ||||| || | || Sbjct 14220747 TCGAGGATGGCATACCACAGCTTTTGCGCCTTGAGCGT-CTTGCGGCCCTTGCCCTCACG 14220805 Query 66232 TTCGTAATGTTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACA 66291 ||||| | |||||| | ||||| || || | || | || | || || Sbjct 14220806 CTCGTACTTTTCGTACAAAGCCTCGAACTCGTCGCCGTAGCAGTCTGCTAGGCCAGGGCA 14220865 Query 66292 CTTGTGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATC 66351 || || || ||||| |||| ||| || || | || || || || ||| ||||| || Sbjct 14220866 CTCGTTGGGGCACATGAGCGTCCAGTCGCCGTTCTTCTCAACCCGCTTCATGAATAGGTC 14220925 Query 66352 AGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTT 66411 || ||||| ||||| ||| || ||||| || || |||||| ||||||| || || Sbjct 14220926 TGGGATCCATAGGGCCAGGAAAAGGTCGCGGGCGCGGATCTCCTCCTTGCCGTGGTTCTT 14220985 Query 66412 GCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGA 66471 ||||| |||||||||||| || | |||||| ||||| || ||||| |||||||| || | Sbjct 14220986 GCGCAGGTCGAGGAACTCGAACACGTCGGCGTGCCACGGCTCCAGATAGATGGCAAAGGC 14221045 Query 66472 GCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAA 66531 ||| || ||| |||||| ||||||||||| || || |||||||| ||||| | Sbjct 14221046 GCCGGGGCGCTTGTTGCCACCCTGGTCGACGTAACGGGCCGTGTTGTTGAAAACACGTAG 14221105 Query 66532 CATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGT-GCCC 66590 ||| || |||| ||||| ||| |||| ||||||||| ||||| ||| || ||| || | Sbjct 14221106 CATGGGCACGATGCCGTTGGATGTGCCGTTGGTGCCGGCGATGTAGGAGCC-CGTGGCGC 14221164 Query 66591 GTATATCGTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACA--ATC 66648 | || ||| | ||| || || ||||| |||||| |||| ||||| ||||| | Sbjct 14221165 GGATGCGGTGGATATTGAGGCCGATACCGCCGGCCATCTTGGAGATCATGGCACAGGTTT 14221224 Query 66649 GGCCACTGTCCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGA 66708 | |||| | | || || || ||| ||| |||| ||| | ||| |||| || Sbjct 14221225 TGAGGGTGTC--GTAGATACCATCGATGCTGTCGTCCTTCATGTCGACCAGGAAGCACGA 14221282 Query 66709 ACTAAGTTGGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTA 66768 || |||| | ||| ||| |||| |||||| ||||| | ||||| || ||||| Sbjct 14221283 CGACAGCTGGGCCTGGGGCGTGCCGGCGTTGAAGAGAGTGGGAGAGGCGTGGGTGAAGTA 14221342 Query 66769 ATGGCGAGACATGTAATTGTACGTCTCGATGACAGCATCAATGTTTTCGCCATGAATCCC 66828 | || |||||| ||||||||||||| || || ||||| ||||| || || Sbjct 14221343 CTTGCTCGACATGAGGTTGTACGTCTCGAGCACGCGCTCGATGTTGTCGCCCCAGATGCC 14221402 Query 66829 GAGTGCACATCGCATCAGGAGGTATTGAGGCCGTTCGACCAGCCGATCCTTGATATGCAT 66888 || || ||||| | | || || || || ||||| | | | | || | | Sbjct 14221403 GACAGCGACGCGCATGATCATGTGCTGGGGGCGCTCGACGATCTTGCCGTCGAGCTTGAG 14221462 Query 66889 TAAGTAGGAGCGTTCCAGGGTCTTGATACCAAAGTACGAGTAATTGAAATCGTTAGCATG 66948 | ||| ||||| ||||||||||||| ||||||||| || ||||| || ||| Sbjct 14221463 CAGGTACGAGCGCTCCAGGGTCTTGAAGCCAAAGTACTGATAGTTGAAGTCCCGGTCATA 14221522 Query 66949 CACGATGGCC 66958 ||||||||| Sbjct 14221523 GACGATGGCC 14221532 Score = 118 bits (130), Expect = 8e-22 Identities = 330/496 (67%), Gaps = 18/496 (4%) Strand=Plus/Plus Query 65078 TCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGTC 65137 ||||| ||||||||||| | | || || || | ||| | || ||||||||||| ||| Sbjct 14219671 TCGACGGTGAACTGGATAGGCTGGGCGGCAGCTTGGGTGCGCAGGTAGTACATGCCCGTC 14219730 Query 65138 TTGAGGCC-AGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAAT-TCGGCT 65195 |||||||| ||| ||| | ||| ||||| || | || | |||| | | |||| Sbjct 14219731 TTGAGGCCTAGCTT-CCAGCCGGCGAAGTGCATAGACGTTA-TCTTGCCCATGGTGGGCT 14219788 Query 65196 CGGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCA 65255 || || || || || | |||||| || |||||| | || || || || |||| Sbjct 14219789 CGCGCATGTGGATGTTGAGCGACTGCGATTGGTCGATGAAGGCGCCGCGGTCAGCCGCCA 14219848 Query 65256 TGTCAATGATACGACGTCCCGATATCTCCCAGACGGTCTTGTACAGGCGAC--GTA-CCT 65312 | | | || || ||| ||||||||||| |||||||||||||| ||| ||| Sbjct 14219849 TCTGGACGACGGTGCGCTGCGAGATCTCCCAGACCGTCTTGTACAGGCGCTTGGTATCCT 14219908 Query 65313 CAATTGGAATCTCCTCAATGTCCTGGACTGAACCACGACGTGCAATAATGCGATTACGCA 65372 | ||| || | |||| ||||| || || | || || ||||| || || Sbjct 14219909 CGG--GGATGCTGG-CGATGTTCTGGATGGAGCCGCCCTCGGCGATGATGCGGTTCTTCA 14219965 Query 65373 TCGACTCTGACCACAAACCCAAATCGATAAGATGTT----GAACCAAGTGACGATTGATG 65428 | || |||||||| || | |||| || | | || ||| | | |||| | Sbjct 14219966 TGTTGTCGGACCACAAGCCAAGCTCGACCAGGTCCTTCAGGAGCCATGGG----TTGACG 14220021 Query 65429 ACTTGGAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAG 65488 || ||||||||||||| || || ||||| ||||||||||||||| ||| || ||| Sbjct 14220022 ACCTGGAACTCGCCGGCGAGCACGCGACGCTGGTAGATGTTGGACGTGTAGGGCTCGAAG 14220081 Query 65489 GATTCAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAAT 65548 | || ||||||| ||||| || | || || || |||||||| || || | || Sbjct 14220082 CACTCGTTGTTGCCCAGAATCTGCGACGTGCTGGCGGTGGGCATGGGCGCCACAAGCAGC 14220141 Query 65549 GAGTTTCGCAATCCGT 65564 ||||| |||| |||| Sbjct 14220142 GAGTTGCGCACACCGT 14220157 >seq12 Length=9596913 Score = 116 bits (128), Expect = 3e-21 Identities = 206/297 (69%), Gaps = 14/297 (5%) Strand=Plus/Minus Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146 || |||| |||||||| ||||| || || || |||||||| | |||||| |||| ||| Sbjct 6219157 ATCTGGCAGATGTACAAGAAGGCTGAGGCCTCGTTCTGGACAGCTGAGGAGATCGACTTG 6219098 Query 61147 TCCAAAGACATGAATGACTGGGAGC----GTTTATCGAGCGGTGAACAACATTTCATTAA 61202 ||||| ||| | | |||||| | | ||| ||| || ||| | | ||||| Sbjct 6219097 TCCAAGGACCTCCACGACTGGAACAACAAGCTTAACGA-CGATGAGAAGTACTTCATCTC 6219039 Query 61203 ACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACG 61262 || | | || ||||||||| | || |||||||| ||||| | |||| || Sbjct 6219038 GCACATCCTCGCCTTCTTTGCC-------ATGGCATCGTCAACGAGAACCTGGTGGAGCG 6218986 Query 61263 TTTCGCGCAG-GAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCA 61321 ||| || | ||||| || || | ||||| ||||| ||||| || || ||||| | Sbjct 6218985 CTTCA-GCGGCGAGGTCCAGGTCCCTGAGGCACGTTGCTTCTATGGGTTTCAGATCATGA 6218927 Query 61322 TGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGC 61378 ||||||| |||||||||||| ||| | || ||||| || ||||||| ||||| Sbjct 6218926 TGGAGAACATCCACTCGGAGACTTACTCGCTCCTGATCGACACCTACATCAAGGAGC 6218870 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397567612371200