Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gaeumannomyces_20sp._20JS-464_20[genbank_20GCA_5F002197995.1_202017- 06-19] 80 sequences; 53,151,282 total letters Query= NC_034209.1 Length=3170 Score E Sequences producing significant alignments: (Bits) Value seq1 87.8 4e-14 seq12 86.0 1e-13 seq34 80.6 5e-12 seq45 78.8 2e-11 >seq1 Length=15654088 Score = 87.8 bits (96), Expect = 4e-14 Identities = 250/384 (65%), Gaps = 9/384 (2%) Strand=Plus/Minus Query 1242 AATAGCTCGACCGAAATCACTGTGCCTGTACGGCGAAACAAGACTGTACAAAACAATTTG 1301 ||||| ||||| || | ||||| | ||||| | || || ||||| |||||||| | Sbjct 13372011 AATAGGACGACCTAAGTTACTGTATTTATACGGTGCAATAAAACTGTTTAAAACAATGTA 13371952 Query 1302 GGCACGAAGTCTGGGACCCCACTCTTACATGAGTGGATGTTGGAATGCGAGACTGCTCGA 1361 || ||| || || || |||||| ||||| | ||||||||| ||||| | Sbjct 13371951 AGCTAAAAGCCTAGGCTTATACAATTACATAAGTGGGTATTGGAATGCCTCGCTGCTTAA 13371892 Query 1362 CGACGACAAGCAGTATGTCGTGATTGATGACGTGCCCTTGGATGACAAGGACATGTTCAA 1421 | || | || | || || || ||||||| || || || | ||| | || Sbjct 13371891 TAGCATTAAAAAATACTTGGTAATCGACGACGTGCTATTAAGCGATAAAAATATGCTTAA 13371832 Query 1422 GCATTTCAAGCAAATGCTCGGGTGCCAGAATAATTTTTCTGTGACGGACAAGTACGTCAA 1481 ||||| |||||||||||| || | | |||||||| || || || |||||| | || Sbjct 13371831 GCATTACAAGCAAATGCTAAAATGTTAAAGCAATTTTTCGGTAACCGATAAGTACTTTAA 13371772 Query 1482 GAAGTTGCACTTCGCGAAGTGGGGGCTGCCATGCATTTACTTGGCCAACCAAGACCCCAG 1541 ||| |||| |||| | | || ||| |||||||| || || ||| || ||| | Sbjct 13371771 AAAGGTGCATTTCGAAAGCTAAGGATTGCTTTGCATTTATTTAGCAAACGAAAACCTACG 13371712 Query 1542 GGAGTACAGCACCATAGACGGGACCCACCGTAGATGGTTGAACGGAAATTGTGTTTTTGT 1601 | ||| | || | |||| | || |||||| ||||||||| | | || || Sbjct 13371711 TGGGTATA-----ATGGGGTGGACGCCACG----TGGTTGGACGGAAATTATATATTCGT 13371661 Query 1602 CGAAGTAGAAAAACCCCTGTTCGT 1625 || | | ||||| |||||||| Sbjct 13371660 GCAAATGCATAAACCACTGTTCGT 13371637 >seq12 Length=9596913 Score = 86.0 bits (94), Expect = 1e-13 Identities = 199/300 (66%), Gaps = 10/300 (3%) Strand=Plus/Minus Query 1327 TACATGAGTGGATGTTGGAATGCGAGACTGCTCGACGACGACAAGCAGTATGTCGTGATT 1386 ||||| || || | |||||| || || ||||| | || | ||| | || || Sbjct 8836944 TACATAAGCGGGTATTGGAACGCCTCGCTACTCGATAGCATTAAAAAATATTTGGTAATC 8836885 Query 1387 GATGACGTGCCCTTGGATGACAAGGACATGTTCAAGCATTTCAAGCAAATGCTCGGGTGC 1446 || |||||| || || ||||| ||| | ||||||| ||||||||||| ||| Sbjct 8836884 GACAACGTGCTATTAAGCGATAAGGATATGCTTAAGCATTATAAGCAAATGCTAAAATGC 8836825 Query 1447 CAGAATAATTTTTCTGTGACGGACAAGTACGTCAAGAAGTTGCACTTCGCGAAGTGGGGG 1506 | | |||||||| || || ||||||||| | || ||| |||| |||| | ||||| Sbjct 8836824 TAAAGCAATTTTTCGGTAACCGACAAGTACTTTAAAAAGGTGCATTTCGAAAGCTGGGGA 8836765 Query 1507 CTGCCATGCATTTACTTGGCCAACCAAGACCCCAGGGAGTACAGCACCATAGACGGGACC 1566 || |||||||| ||||| ||| || |||| | |||| | | ||| Sbjct 8836764 TGGCTTTGCATTTATTTGGCAAACGAAAACCCACGTAAGTATA---------ATGGGTAA 8836714 Query 1567 CACCGTAGATGGTTGAACGGAAATTGTGTTTTTGTCGAAGTAGAAAAACCCCTGTTCGTA 1626 || | ||||||| | ||||||||||| ||| | || | | ||||| |||||||| Sbjct 8836713 ATGCG-ATATGGTTGGATGGAAATTGTGTGTTTATACAAATGCATAAACCATTGTTCGTA 8836655 Score = 80.6 bits (88), Expect = 5e-12 Identities = 107/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 1375 TATGTCGTGATTGATGACGTGCCCTTGGATGACAAGGACATGTTCAAGCATTTCAAGCAA 1434 ||| | || |||||| |||||| || || ||||| ||| | ||||||| |||||| Sbjct 6070434 TATTTGGTAATTGATAACGTGCTATTAAGCGATAAGGATATGCTTAAGCATTATAAGCAA 6070493 Query 1435 ATGCTCGGGTGCCAGAATAATTTTTCTGTGACGGACAAGTACGTCAAGAAGTTGCACTTC 1494 ||||| |||| | | ||||||| | ||||| |||||| | || ||| |||| ||| Sbjct 6070494 ATGCTAAAGTGCTAAAGCAATTTTTTAATAACGGATAAGTACTTTAAAAAGGTGCATTTC 6070553 Query 1495 GCGAAGTGGGGGCTGCCATGCATTTACTT 1523 | | ||||| ||| |||||||| || Sbjct 6070554 GAAAGCTGGGGATTGCTTTGCATTTATTT 6070582 >seq34 Length=5620442 Score = 80.6 bits (88), Expect = 5e-12 Identities = 196/297 (66%), Gaps = 0/297 (0%) Strand=Plus/Minus Query 1242 AATAGCTCGACCGAAATCACTGTGCCTGTACGGCGAAACAAGACTGTACAAAACAATTTG 1301 |||| ||||||||| | ||| || ||||| | | ||||| | ||| |||||||| | Sbjct 4436010 AATAAGTCGACCGAAGTTACTATGTTTGTACAGTGCAACAAAATTGTTTAAAACAATGTA 4435951 Query 1302 GGCACGAAGTCTGGGACCCCACTCTTACATGAGTGGATGTTGGAATGCGAGACTGCTCGA 1361 || ||| | || | |||||| ||||| | ||||||||| ||||| | Sbjct 4435950 AGCCAAAAGCTTAGGCTTATATAATTACATAAGTGGGTATTGGAATGCTTCGCTGCTTAA 4435891 Query 1362 CGACGACAAGCAGTATGTCGTGATTGATGACGTGCCCTTGGATGACAAGGACATGTTCAA 1421 | || | || | | || ||| |||||| || || ||||| || | || Sbjct 4435890 TAGCATTAAAAAATACTTAATAATCGATAACGTGCTATTAAGCGATAAGGATATACTTAA 4435831 Query 1422 GCATTTCAAGCAAATGCTCGGGTGCCAGAATAATTTTTCTGTGACGGACAAGTACGTCAA 1481 ||||| ||||||||||| ||| | || |||||||| || || ||||| ||| | || Sbjct 4435830 GCATTATAAGCAAATGCTAAAATGCTAAAACAATTTTTCGGTAACCGACAAATACCTTAA 4435771 Query 1482 GAAGTTGCACTTCGCGAAGTGGGGGCTGCCATGCATTTACTTGGCCAACCAAGACCC 1538 ||| | || |||| | | | ||| |||||||| ||||| ||| || |||| Sbjct 4435770 AAAGGTACATTTCGAAAGCTAAGAATTGCTTTGCATTTATTTGGCAAACGAAAACCC 4435714 >seq45 Length=5506958 Score = 78.8 bits (86), Expect = 2e-11 Identities = 170/253 (67%), Gaps = 1/253 (0%) Strand=Plus/Minus Query 1243 ATAGCTCGACCGAAATCACTGTGCCTGTACGGCGAAACAAGACTGTACAAAACAATTTGG 1302 |||| |||| ||||||||||| | ||||| | || || | ||| |||| ||| ||| Sbjct 1762702 ATAGGACGACTTAAATCACTGTGT-TATACGGTGCAATAAAATTGTTTAAAATAATATGG 1762644 Query 1303 GCACGAAGTCTGGGACCCCACTCTTACATGAGTGGATGTTGGAATGCGAGACTGCTCGAC 1362 | ||| |||| || || || || || |||| |||||| |||||||| Sbjct 1762643 GTTAAAAGCTTGGGCTTATACAACTATATAAGCGGGTGTTAGAATGCCTCGCTGCTCGAT 1762584 Query 1363 GACGACAAGCAGTATGTCGTGATTGATGACGTGCCCTTGGATGACAAGGACATGTTCAAG 1422 || || | ||| | | ||| | ||||||| || || ||||| ||| | ||| Sbjct 1762583 AACATTAAAAAATATTTAATAATTAACGACGTGCTATTAAGCGATAAGGATATGCTTAAG 1762524 Query 1423 CATTTCAAGCAAATGCTCGGGTGCCAGAATAATTTTTCTGTGACGGACAAGTACGTCAAG 1482 |||| ||||||||||| ||| | | |||||||| || || || |||||| | || Sbjct 1762523 CATTATAAGCAAATGCTAAAATGCTAAAGCAATTTTTCGGTAACCGATAAGTACTTTAAA 1762464 Query 1483 AAGTTGCACTTCG 1495 ||| | || |||| Sbjct 1762463 AAGGTACATTTCG 1762451 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 10031991222000