Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gaeumannomyces_20sp._20JS-464_20[genbank_20GCA_5F002197995.1_202017-
06-19] 80 sequences; 53,151,282 total letters
Query= NC_034209.1
Length=3170
Score E
Sequences producing significant alignments: (Bits) Value
seq1 87.8 4e-14
seq12 86.0 1e-13
seq34 80.6 5e-12
seq45 78.8 2e-11
>seq1
Length=15654088
Score = 87.8 bits (96), Expect = 4e-14
Identities = 250/384 (65%), Gaps = 9/384 (2%)
Strand=Plus/Minus
Query 1242 AATAGCTCGACCGAAATCACTGTGCCTGTACGGCGAAACAAGACTGTACAAAACAATTTG 1301
||||| ||||| || | ||||| | ||||| | || || ||||| |||||||| |
Sbjct 13372011 AATAGGACGACCTAAGTTACTGTATTTATACGGTGCAATAAAACTGTTTAAAACAATGTA 13371952
Query 1302 GGCACGAAGTCTGGGACCCCACTCTTACATGAGTGGATGTTGGAATGCGAGACTGCTCGA 1361
|| ||| || || || |||||| ||||| | ||||||||| ||||| |
Sbjct 13371951 AGCTAAAAGCCTAGGCTTATACAATTACATAAGTGGGTATTGGAATGCCTCGCTGCTTAA 13371892
Query 1362 CGACGACAAGCAGTATGTCGTGATTGATGACGTGCCCTTGGATGACAAGGACATGTTCAA 1421
| || | || | || || || ||||||| || || || | ||| | ||
Sbjct 13371891 TAGCATTAAAAAATACTTGGTAATCGACGACGTGCTATTAAGCGATAAAAATATGCTTAA 13371832
Query 1422 GCATTTCAAGCAAATGCTCGGGTGCCAGAATAATTTTTCTGTGACGGACAAGTACGTCAA 1481
||||| |||||||||||| || | | |||||||| || || || |||||| | ||
Sbjct 13371831 GCATTACAAGCAAATGCTAAAATGTTAAAGCAATTTTTCGGTAACCGATAAGTACTTTAA 13371772
Query 1482 GAAGTTGCACTTCGCGAAGTGGGGGCTGCCATGCATTTACTTGGCCAACCAAGACCCCAG 1541
||| |||| |||| | | || ||| |||||||| || || ||| || ||| |
Sbjct 13371771 AAAGGTGCATTTCGAAAGCTAAGGATTGCTTTGCATTTATTTAGCAAACGAAAACCTACG 13371712
Query 1542 GGAGTACAGCACCATAGACGGGACCCACCGTAGATGGTTGAACGGAAATTGTGTTTTTGT 1601
| ||| | || | |||| | || |||||| ||||||||| | | || ||
Sbjct 13371711 TGGGTATA-----ATGGGGTGGACGCCACG----TGGTTGGACGGAAATTATATATTCGT 13371661
Query 1602 CGAAGTAGAAAAACCCCTGTTCGT 1625
|| | | ||||| ||||||||
Sbjct 13371660 GCAAATGCATAAACCACTGTTCGT 13371637
>seq12
Length=9596913
Score = 86.0 bits (94), Expect = 1e-13
Identities = 199/300 (66%), Gaps = 10/300 (3%)
Strand=Plus/Minus
Query 1327 TACATGAGTGGATGTTGGAATGCGAGACTGCTCGACGACGACAAGCAGTATGTCGTGATT 1386
||||| || || | |||||| || || ||||| | || | ||| | || ||
Sbjct 8836944 TACATAAGCGGGTATTGGAACGCCTCGCTACTCGATAGCATTAAAAAATATTTGGTAATC 8836885
Query 1387 GATGACGTGCCCTTGGATGACAAGGACATGTTCAAGCATTTCAAGCAAATGCTCGGGTGC 1446
|| |||||| || || ||||| ||| | ||||||| ||||||||||| |||
Sbjct 8836884 GACAACGTGCTATTAAGCGATAAGGATATGCTTAAGCATTATAAGCAAATGCTAAAATGC 8836825
Query 1447 CAGAATAATTTTTCTGTGACGGACAAGTACGTCAAGAAGTTGCACTTCGCGAAGTGGGGG 1506
| | |||||||| || || ||||||||| | || ||| |||| |||| | |||||
Sbjct 8836824 TAAAGCAATTTTTCGGTAACCGACAAGTACTTTAAAAAGGTGCATTTCGAAAGCTGGGGA 8836765
Query 1507 CTGCCATGCATTTACTTGGCCAACCAAGACCCCAGGGAGTACAGCACCATAGACGGGACC 1566
|| |||||||| ||||| ||| || |||| | |||| | | |||
Sbjct 8836764 TGGCTTTGCATTTATTTGGCAAACGAAAACCCACGTAAGTATA---------ATGGGTAA 8836714
Query 1567 CACCGTAGATGGTTGAACGGAAATTGTGTTTTTGTCGAAGTAGAAAAACCCCTGTTCGTA 1626
|| | ||||||| | ||||||||||| ||| | || | | ||||| ||||||||
Sbjct 8836713 ATGCG-ATATGGTTGGATGGAAATTGTGTGTTTATACAAATGCATAAACCATTGTTCGTA 8836655
Score = 80.6 bits (88), Expect = 5e-12
Identities = 107/149 (72%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 1375 TATGTCGTGATTGATGACGTGCCCTTGGATGACAAGGACATGTTCAAGCATTTCAAGCAA 1434
||| | || |||||| |||||| || || ||||| ||| | ||||||| ||||||
Sbjct 6070434 TATTTGGTAATTGATAACGTGCTATTAAGCGATAAGGATATGCTTAAGCATTATAAGCAA 6070493
Query 1435 ATGCTCGGGTGCCAGAATAATTTTTCTGTGACGGACAAGTACGTCAAGAAGTTGCACTTC 1494
||||| |||| | | ||||||| | ||||| |||||| | || ||| |||| |||
Sbjct 6070494 ATGCTAAAGTGCTAAAGCAATTTTTTAATAACGGATAAGTACTTTAAAAAGGTGCATTTC 6070553
Query 1495 GCGAAGTGGGGGCTGCCATGCATTTACTT 1523
| | ||||| ||| |||||||| ||
Sbjct 6070554 GAAAGCTGGGGATTGCTTTGCATTTATTT 6070582
>seq34
Length=5620442
Score = 80.6 bits (88), Expect = 5e-12
Identities = 196/297 (66%), Gaps = 0/297 (0%)
Strand=Plus/Minus
Query 1242 AATAGCTCGACCGAAATCACTGTGCCTGTACGGCGAAACAAGACTGTACAAAACAATTTG 1301
|||| ||||||||| | ||| || ||||| | | ||||| | ||| |||||||| |
Sbjct 4436010 AATAAGTCGACCGAAGTTACTATGTTTGTACAGTGCAACAAAATTGTTTAAAACAATGTA 4435951
Query 1302 GGCACGAAGTCTGGGACCCCACTCTTACATGAGTGGATGTTGGAATGCGAGACTGCTCGA 1361
|| ||| | || | |||||| ||||| | ||||||||| ||||| |
Sbjct 4435950 AGCCAAAAGCTTAGGCTTATATAATTACATAAGTGGGTATTGGAATGCTTCGCTGCTTAA 4435891
Query 1362 CGACGACAAGCAGTATGTCGTGATTGATGACGTGCCCTTGGATGACAAGGACATGTTCAA 1421
| || | || | | || ||| |||||| || || ||||| || | ||
Sbjct 4435890 TAGCATTAAAAAATACTTAATAATCGATAACGTGCTATTAAGCGATAAGGATATACTTAA 4435831
Query 1422 GCATTTCAAGCAAATGCTCGGGTGCCAGAATAATTTTTCTGTGACGGACAAGTACGTCAA 1481
||||| ||||||||||| ||| | || |||||||| || || ||||| ||| | ||
Sbjct 4435830 GCATTATAAGCAAATGCTAAAATGCTAAAACAATTTTTCGGTAACCGACAAATACCTTAA 4435771
Query 1482 GAAGTTGCACTTCGCGAAGTGGGGGCTGCCATGCATTTACTTGGCCAACCAAGACCC 1538
||| | || |||| | | | ||| |||||||| ||||| ||| || ||||
Sbjct 4435770 AAAGGTACATTTCGAAAGCTAAGAATTGCTTTGCATTTATTTGGCAAACGAAAACCC 4435714
>seq45
Length=5506958
Score = 78.8 bits (86), Expect = 2e-11
Identities = 170/253 (67%), Gaps = 1/253 (0%)
Strand=Plus/Minus
Query 1243 ATAGCTCGACCGAAATCACTGTGCCTGTACGGCGAAACAAGACTGTACAAAACAATTTGG 1302
|||| |||| ||||||||||| | ||||| | || || | ||| |||| ||| |||
Sbjct 1762702 ATAGGACGACTTAAATCACTGTGT-TATACGGTGCAATAAAATTGTTTAAAATAATATGG 1762644
Query 1303 GCACGAAGTCTGGGACCCCACTCTTACATGAGTGGATGTTGGAATGCGAGACTGCTCGAC 1362
| ||| |||| || || || || || |||| |||||| ||||||||
Sbjct 1762643 GTTAAAAGCTTGGGCTTATACAACTATATAAGCGGGTGTTAGAATGCCTCGCTGCTCGAT 1762584
Query 1363 GACGACAAGCAGTATGTCGTGATTGATGACGTGCCCTTGGATGACAAGGACATGTTCAAG 1422
|| || | ||| | | ||| | ||||||| || || ||||| ||| | |||
Sbjct 1762583 AACATTAAAAAATATTTAATAATTAACGACGTGCTATTAAGCGATAAGGATATGCTTAAG 1762524
Query 1423 CATTTCAAGCAAATGCTCGGGTGCCAGAATAATTTTTCTGTGACGGACAAGTACGTCAAG 1482
|||| ||||||||||| ||| | | |||||||| || || || |||||| | ||
Sbjct 1762523 CATTATAAGCAAATGCTAAAATGCTAAAGCAATTTTTCGGTAACCGATAAGTACTTTAAA 1762464
Query 1483 AAGTTGCACTTCG 1495
||| | || ||||
Sbjct 1762463 AAGGTACATTTCG 1762451
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 10031991222000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |