Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glonium_20stellatum_20[genbank_20GCA_5F001692915.1_202016-07-26] 2,730 sequences; 40,521,621 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq1467 178 1e-39 seq1023 111 1e-19 >seq1467 Length=78481 Score = 178 bits (196), Expect = 1e-39 Identities = 414/622 (67%), Gaps = 2/622 (0%) Strand=Plus/Minus Query 66319 ACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATC 66378 ||||| || || || || ||| || ||||| || ||||| | |||||||||||| || Sbjct 49446 ACCATTTTGCTCGACTCGCTTCATGAAAAGATCTGGAATCCACAAGGCGTAGAAGAGGTC 49387 Query 66379 GCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTC 66438 || || || |||||| |||||||||| || || | || || || |||| || Sbjct 49386 TCGGGCACGAACCTCCTCCTTGCCGTGATTCTTTCGGAGATCAAGAAAACTGAAGACATC 49327 Query 66439 GGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTC 66498 || |||||||| || ||||||||||| || | || || || ||||| ||||| Sbjct 49326 AGCGTGCCATGGCTCGAGGTAGATGGCAAAGGCACCGGGCCGCTTATTCCCACCCTGGTC 49267 Query 66499 GACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCC 66558 || |||||||| |||||| |||| || ||||| |||| || ||||| ||| | || Sbjct 49266 AACATAGCGAGCAGTGTTGTTGTAGACTCGTAACATTGGTATTAGGCCGTTCGATGTACC 49207 Query 66559 ATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCGTGAACATTCAGACCAATACC 66618 || || || | || || || || || || ||| || || ||||||||||| Sbjct 49206 GTTCGTTCCACCAATATATGAACCAGTAGCACGAATGCGGTGGACGTTTAGACCAATACC 49147 Query 66619 ACCGGCCGTCTTCGAGATGGCAGCACAATCGGCCACTGTCCGGAATATGCCGTCAATGGA 66678 || || || || ||||| ||||| || ||| | ||||| || ||| Sbjct 49146 GCCAGCGGTTTTGGAGATCATGGCACACGTTTTCAGTGTGTCATAAATGCCTTCGATGCT 49087 Query 66679 GTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGTGTGGCGGCCGA 66738 ||| |||| ||| | |||| ||||||| | || | ||| ||| |||| Sbjct 49086 GTCTTCCTTCATGTCAATGAGGAAGCATGAGGACATCTGTGCAGAGGGCGTGCCGGCATT 49027 Query 66739 GAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGACATGTAATTGTACGTCTCGAT 66798 ||| || ||||| | ||| || |||||||| | | ||||| |||| ||||||||| | Sbjct 49026 GAATAGTGTGGGCGAAGCATGAGTAAAGTATTTGTTGGACATATAATCGTACGTCTCTAG 48967 Query 66799 GACAGCATCAATGTTTTCGCCATGAATCCCGAGTGCACATCGCATCAGGAGGTATTGAGG 66858 | ||||| | |||||||||||| || | ||| ||||| || | || || || Sbjct 48966 TGCTTTCTCAATATCTTCGCCATGAATGCCAACGGCAACACGCATGAGCATGTGCTGTGG 48907 Query 66859 CCGTTCGACCAGCCGATCC-TTGATATGCATTAAGTAGGAGCGTTCCAGGGTCTTGATAC 66917 || || | ||| | || | ||| | | | || || ||||| || ||||||| | Sbjct 48906 TCGCTC-AGCAGTCTTGCCGTCGATTCGTAGGAGATATGATCGTTCAAGTGTCTTGAATC 48848 Query 66918 CAAAGTACGAGTAATTGAAATC 66939 ||||| | ||| ||||| || Sbjct 48847 CAAAGAATTGGTAGTTGAAGTC 48826 Score = 172 bits (190), Expect = 4e-38 Identities = 269/381 (71%), Gaps = 14/381 (4%) Strand=Plus/Minus Query 65813 TCGGCCAGACCTTGAACTCCAATACCGATGGGACGATGACGCAAATTGGAACGTCTCGCC 65872 || || ||||| || || |||| ||| ||||| |||||||| || ||| || | ||| Sbjct 49992 TCAGCAAGACCCTGGACGCCAAGACCAATGGGCCGATGACGGAAGTTGCTGCGGCGAGCC 49933 Query 65873 TCAGGTACAGGGTAGTAATTGATATCGATAATGCGATTCAAATTGCGTGTCACCACATGC 65932 || |||||||| | |||| ||||| || ||| | |||||| ||||| || || Sbjct 49932 TCTTCGACAGGGTAATGGTTGACTTCGATGATTTTATTGAGATTGCGAGTCACGACTTGG 49873 Query 65933 ACGA-TACGTCGCAATTGTTCGAAATCAAAATGTTTAGGACGATCGGGAGTGCCGGACAC 65991 || | | ||| |||| | | |||||| | || | ||||| | ||| | Sbjct 49872 ACTACTTCGT-GCAACTTGGCAAAATCATA---TTCACCACGATTGT-AGT--------C 49826 Query 65992 CACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGT 66051 ||| || || ||||||||||| || || || |||||||| | ||||| || || || Sbjct 49825 CACGAAGGACGGGAGGGCAAGAGACGCAAGATTACAGACAGCCACTTCGTCGGGTGCTGT 49766 Query 66052 ATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATT 66111 ||||||| ||| || ||||| ||||| || ||| || || |||| ||||| || || Sbjct 49765 GTACTCGATAATCTCTGTGCAAAGATTGGAGCTGCGAATAGTTCCCAGATTCTTCTGGTT 49706 Query 66112 ACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGA 66171 ||||| |||||||| || || ||||| | |||||| || |||||||||| ||||| Sbjct 49705 GCTCTTCCGATTGCAGGCGTCTTTGTAGAGCATGTATGGGTTGCCGGTCTCGGTTTGGGC 49646 Query 66172 CTCAATGATGGCGTGCCAAAG 66192 ||| | ||||||| |||||| Sbjct 49645 CTCGAGAATGGCGTACCAAAG 49625 >seq1023 Length=12933 Score = 111 bits (122), Expect = 1e-19 Identities = 204/296 (69%), Gaps = 5/296 (2%) Strand=Plus/Plus Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146 || |||| |||||||| ||||| ||||| ||||||||||| | || || | ||| | Sbjct 6654 ATCTGGCAGATGTACAAGAAGGCAGAAGCATCCTTCTGGACCGCCGAAGAAATTGATCTA 6713 Query 61147 TCCAAAGACATGAATGACTGGGA---GCGTTTATCGAGCGGTGAACAACATTTCATTAAA 61203 |||||||| | | |||||| | |||| | | || || | || ||| Sbjct 6714 TCCAAAGATCTTCACGACTGGAACAAGCGTCTCAACAACGACGAGCGCTTCTTTATTTCC 6773 Query 61204 CATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGT 61263 || || | || ||||| || || || || ||||||||||||||||| || | || || Sbjct 6774 CACGTCCTCGCATTCTTCGCAGCATCAGATGGTATCGTCAATGAGAACTTGGTTGAGCGA 6833 Query 61264 TTC-GCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCAT 61322 ||| ||| || || ||||| | || ||||| || || || ||||||||||| || Sbjct 6834 TTCAGCG-GCGAAGTACAAGTACCAGAAGCGCGATGCTTTTATGGCTTCCAGATCATGAT 6892 Query 61323 GGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGC 61378 |||||| |||||||||||| ||| | | || || || ||||| || |||| Sbjct 6893 GGAGAACATCCACTCGGAGACATACTCCCTGTTGATTGACACCTACATAAGCGAGC 6948 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397554772167200