Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Graphilbum_20fragrans_20[genbank_20GCA_5F001513895.1_202016-01-13] 80 sequences; 34,270,891 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq18 416 2e-111 seq25 134 1e-26 >seq18 Length=496665 Score = 416 bits (460), Expect = 2e-111 Identities = 1249/1901 (66%), Gaps = 58/1901 (3%) Strand=Plus/Plus Query 65078 TCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGTC 65137 || || ||||||||||| | | || || |||| ||| | || ||||||||||| ||| Sbjct 376419 TCCACAGTGAACTGGATGGGCTGGGCCGCGGCCTGGGTGCGCAGGTAGTACATGCCTGTC 376478 Query 65138 TTGAGGCC-AGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAAT-TCGGCT 65195 ||||| || ||| ||| | ||| ||||| | || | || |||| | |||||| Sbjct 376479 TTGAGACCCAGCTT-CCAGCCGGCGAAGTGCAT-GCTGGTGATCTTGCCCATGGTCGGCT 376536 Query 65196 CGGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCA 65255 || || || || || | |||||| ||| || ||| | ||||| || || |||| Sbjct 376537 CGCGCATGTGAATGTTGAGCGACTGCGACTGGTCAATGAAGGCGCCACGGTCGGCCGCCA 376596 Query 65256 TGTCAATGATACGACGTCCCGATATCTCCCAGACGGTCTTGTACAGGCGACGTAC-CTCA 65314 | | | ||| || ||| ||||||||||| |||||||| || || | | ||| Sbjct 376597 TCTGCACAATAGTGCGCTGCGAGATCTCCCAGACCGTCTTGTAGAG-CGCCTTGGTCTCG 376655 Query 65315 ATTGGAATCTCCTCAATGTCCTGGACTGAACCAC-GACGTGCAATAATGCGATTACGCAT 65373 || || | |||| ||||| ||||| | | || ||||| ||||| || ||| Sbjct 376656 TCAGGGATGTTGGGGATGTTCTGGATGGAACCGCCGTCG-GCAATGATGCGGTTCTTCAT 376714 Query 65374 CGACTCTGACCACAAACCCAAATCGATAAGATGTTGAACCAAGTGACGATTGATGACTTG 65433 || ||||||| || |||| || | | | || | || | || || Sbjct 376715 GTTGTCGGACCACAGGTTCATCTCGACCAGGTCACGCAGCAGCCAGGGGTTCACCACCTG 376774 Query 65434 GAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGATTC 65493 ||||||||||| ||| ||||| || || |||||||| ||| ||| |||||| | || Sbjct 376775 GAACTCGCCGGCCAGCACACGGCGCTGGTAAATGTTGGAGGTGTAGGGCTCAAAGCACTC 376834 Query 65494 AGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGAGTT 65553 ||||||| || || || | || || || || |||||||| || | || || ||| Sbjct 376835 GTTGTTGCCCAGGATCTGTGACGTCGAGGCCGTCGGCATGGGCGCCATCAGCAGACTGTT 376894 Query 65554 TCGCAATCCGTTCATTTCAATGTTGTGACGCAATTCGTCCCAGTTCCACA--TCGGTTTA 65611 || | |||| | | | || ||| ||||| || ||||| ||||| || | Sbjct 376895 GCGGATGCCGTGCTTCTTGATCTTGGCACGCAGCTCAGTCCAGTCCCACAGATCCGAGGG 376954 Query 65612 TCGTCGACATCCACGGGCCACATATCCTGTTGCAGGGTTCC----GATACTGGCCGGTGA 65667 ||| ||||| | ||||| ||| | |||||| | || || || ||| || Sbjct 376955 -CGT-GACATTC------CACATGTCCGGCTGCAGGATGCCCTGCGACACAGGC----GA 377002 Query 65668 ACCGAGGAAACTATCGTACACTCCCTCCTCCTTGGCAAGTTGACAGCTGGTCTCGAGTGC 65727 || | | |||| || ||||| || ||| || | | ||||||||| || Sbjct 377003 GCCCTCGTACGACGCGTAGACGCCCTCGATCTCGGCCAGCTCGCTCGAGGTCTCGAGAGC 377062 Query 65728 GGCAAAATAAATGGTCTCGAAAATGCGTCGATTAAGTTCACGTGCCTCATCGCTCTCGTA 65787 || || ||||||||||| || | || || | || ||||| ||| | Sbjct 377063 AGCGTGGTAGATGGTCTCGAAGATCTGGATGTTGAGCTTGCGCGCCTCGGGCGACTCAAA 377122 Query 65788 CGGCATACCCATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACG 65847 ||||| | || | | ||| | || ||||| || || | || | ||| |||||||| Sbjct 377123 TGGCATGCGCAGCGCCAAAAAGGCATCAGCCAGGCCCTGGATACCCACACCAATGGGACG 377182 Query 65848 ATGACGCAAATTGGAACGTCTCGCCTCAGGTACAGGGTAGTAATTGATATCGATAATGCG 65907 || |||| ||| | ||||| || || |||||||| |||| || || ||||| Sbjct 377183 GTGGCGCATGTTGCTGTTGCGAGCCTCGGGCACCGGGTAGTAGTTGACGTCAATGATGCG 377242 Query 65908 ATTCAAATTGCGTGTCACCACATGCACGA--TACGTCGCAATTGTTCGAAATCAAAATGT 65965 |||| ||||| |||| |||| | ||| || | || | | | || Sbjct 377243 GTTCAGGTTGCG------CACA---ACGACCTTGGTCACA-TCGTGCAGGGCCTTGAAGT 377292 Query 65966 TTAGGACGATCGGGAGTGCCGGACACCACAAACTTGGGAAGGGCAAGAGATGCGAGGTTG 66025 | | || || | | | |||| || || ||||||| || || |||||| Sbjct 377293 C---GTAGCTCTGGTTGGACTGGT-CCACGAAAGCCGGCAGGGCAATGGAGGCCAGGTTG 377348 Query 66026 CAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTGCAG 66085 |||||||| | ||||||||| || | ||||||||||| || ||||||| || || | Sbjct 377349 CAGACAGCGACCTCGTCAGGGGCCGAGTACTCGACAATCTCCGTGCACAAGTTGGAGCTG 377408 Query 66086 CGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATCATG 66145 || ||||||||||| |||| || || |||||||| ||||| |||||||||| |||| Sbjct 377409 CGGATGGTGCCCAAGTTCTTCTGGTTGCTCTTGCGGTTGCAGTGGTCCTTGTACAGCATG 377468 Query 66146 TACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTC 66205 | || |||||||||| |||| ||||| ||||| | ||| || | ||||| Sbjct 377469 AAGGGGTTGCCGGTCTCGGTCTGGGCCTCAAGAATGGCATACCACAGCTTCTGAGCCTTG 377528 Query 66206 ACCGTACGT-----ACCGCCCTACCTTTGCGTTCGTAATGTTCGTAGAGGTGTTCGAAGG 66260 | || | || ||||| |||| ||||| | |||||| ||| |||||| Sbjct 377529 ATGGTGCCGCGGCCACGGCCCT-CCTTC----TCGTACTTTTCGTACAGGGCTTCGAACT 377583 Query 66261 ATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAATCAC 66320 || || | |||| ||| | || |||| | || ||||| |||| ||| | Sbjct 377584 CCTCGCCGTAGCAGTCGGCCAGGCCAGGGCACTCGCTAGGGCACATGAGCGTCCAGGTGC 377643 Query 66321 CATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGC 66380 | | || || || || ||| || |||||||||||||| || || ||| ||||| | Sbjct 377644 CGTTCTTCTCCACGCGCTTCATGAACAGATCAGGTATCCACAGAGCCATGAACAGATCAC 377703 Query 66381 GTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGG 66440 | || || |||||| ||||||| || ||||||| ||||||||||||||||| ||||| Sbjct 377704 GGGCGCGGATCTCCTCCTTGCCGTGGTTCTTGCGCAGGTCGAGGAACTCAAAGACGTCGG 377763 Query 66441 CATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGA 66500 | ||||| || |||||||||||| ||| | ||| || ||| || || ||||||| Sbjct 377764 CGTGCCACGGCTCCAGGTAGATGCAGAAAGCGCCGGGGCGCTTGTTTCCGCCCTGGTCGA 377823 Query 66501 CGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCAT 66560 |||||||||| ||||||||||| |||| ||| || | || ||||| || |||| | Sbjct 377824 CGTAGCGAGCCGTGTTGTTGAAGACGCGCAGCATGGGGATGATGCCGTTGGAGGTGCCGT 377883 Query 66561 TGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCGTGAACATTCAGACCAATACCAC 66620 |||||||| | ||| ||||||| || || || ||| | || || ||||| || | Sbjct 377884 TGGTGCCGGCAATGTAGGATCCTGTGGCACGGATGCGGTGTATGTTGAGGCCAATGCCGC 377943 Query 66621 CGGCCGTCTTCGAGATGGCAGCACA-ATC-GGCCACTGTCCGGAATATGCCGTCAATGGA 66678 | |||||||| || || ||||| || | |||| | | ||||| || ||| Sbjct 377944 CAGCCGTCTTGGAAATCATGGCACAGGTCTTGAGGGTGTC--GTAAATGCCCTCGATGCT 378001 Query 66679 GTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGTGTGGCGGCCGA 66738 ||| |||||||| | ||| |||| || || || | | || || |||| Sbjct 378002 GTCGTCCTTGATGTCGACCAGGAAGCACGACGACAGCTGAGCCTGCGGCGTACCGGCGTT 378061 Query 66739 GAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGACATGTAATTGTACGTCTCGAT 66798 ||| || ||||||| ||||| || ||| | | || |||||||| ||||| ||||| || Sbjct 378062 GAAAAGCGTGGGTGAGGCGTGAGTGAAGGACTTGCTGGACATGTAGTTGTAGGTCTCCAT 378121 Query 66799 GACAGCATCAATGTTTTCGCCATGAATCCCGAGTGCACATCGCATCAGGAGGTATTGAGG 66858 ||| || | || ||||| || || | || ||||| | | || ||||| Sbjct 378122 AACACGCTCGACATTGTCGCCCCAGATGCCCACAGCCACGCGCATAATCATGTGCTGAGG 378181 Query 66859 CCGTTCGACCA-GCCGATCCTTGATATGCATTAAGTAGGAGCGTTCCAGGGTCTTGATAC 66917 ||| || || | | || | || | | | | ||||||||| ||||||||||||| | Sbjct 378182 CCGCTCAACAATGGCGCT-GTTCAGCTTGAGCAGGTAGGAGCGCTCCAGGGTCTTGAAGC 378240 Query 66918 CAAAGTACGAGTAATTGAAATCGTTAGCATGCACGATGGCC 66958 |||||||| ||||||||| ||| ||| || |||||| Sbjct 378241 CAAAGTACTGGTAATTGAAGTCGCGGTCATAGACAATGGCC 378281 >seq25 Length=315089 Score = 134 bits (148), Expect = 1e-26 Identities = 234/336 (70%), Gaps = 11/336 (3%) Strand=Plus/Minus Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146 || |||| |||||||| ||||| || || || |||||||| | |||||| | || || Sbjct 43911 ATCTGGCAGATGTACAAGAAGGCCGAGGCCTCGTTCTGGACTGCCGAGGAGATTGACCTG 43852 Query 61147 TCCAAAGACATGAATGACTGGGAG---CGTTTATCGAGCGGTGAACAAC---ATTTCATT 61200 ||||| || | |||||||| | ||| | || || ||| | | | ||| | Sbjct 43851 TCCAAGGATCTCCATGACTGGAACAACCGTAT---GAACGATGACGAGCGCTACTTCGTC 43795 Query 61201 AAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAA 61260 || | |||||||||||||||| |||||||| || ||||| ||||| | | || Sbjct 43794 TCCCACATCCTGGCGTTCTTTGCCGCCTCGGACGGCATTGTCAACGAGAACCTGGTCGAG 43735 Query 61261 CGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCC 61320 || ||| ||||| ||||| | ||||| || || ||||||||||||||||| Sbjct 43734 CGCTTCAGTGGCGAGGTCCAAGTCCCTGAGGCCCGCTGCTTCTACGGCTTCCAGATCATG 43675 Query 61321 ATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGG 61380 |||||||| |||||||||||| ||| | ||||| || || ||||||| ||| | Sbjct 43674 ATGGAGAACATCCACTCGGAGACCTACTCCCTCCTCATTGACACCTACATCAAGGACCCT 43615 Query 61381 GCGGAACGTGAACGA-TTGTTCAATGCCATCGAGAC 61415 || || || || | | ||||||| ||| | || || Sbjct 43614 GCTGAGCG-GACCCACCTGTTCAACGCCGTTGACAC 43580 Score = 125 bits (138), Expect = 6e-24 Identities = 305/459 (66%), Gaps = 11/459 (2%) Strand=Plus/Minus Query 61477 ACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCG 61536 || |||| | | || ||| | || || || | || |||||| | || |||||||| | Sbjct 43460 ACCTTTGCTCAGCGCTTGGTCGCTTTCGCTGCTGTTGAGGGTATCTTCTTCAGTGGTGCC 43401 Query 61537 TTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAAT 61596 || | | ||||| ||| ||||||| || || || |||||||||||||||||| ||| Sbjct 43400 TTCTCGTCCATCTTCTGGCTGAAGAAGCGAGGCCTGATGCCCGGTCTGACCTTCTCCAAC 43341 Query 61597 GAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGCTGTTTTGCTATTCAAACGC 61656 ||| |||| || || |||||||| |||| || || || |||| ||| ||| Sbjct 43340 GAGCTGATCTCGCGTGACGAGGGTCTGCACACCGACTTCGCCTGCCTGCTGTTC--TCGC 43283 Query 61657 TATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACT 61716 | ||| ||| || || || || || | || || || || || || Sbjct 43282 -ACCTGAAGAACCGCCCTAGCAAGCAGGTCGTCGAGGACATCATTGTCGATGCCGTTCGC 43224 Query 61717 ATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGA 61776 ||||| || || || ||||| || ||| |||| | | || |||||||||| | Sbjct 43223 ATCGAGCAAGAGTTCCTGACCGAGGCTCTGCCGTGCGCTCTGCTCGGCATGAACTCCACC 43164 Query 61777 CTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTCGATTTGGGTATGAAG 61836 || ||| |||||| ||||| || || || ||||| ||| |||| | | | || | || Sbjct 43163 CTCATGAAGCAGTACATTGAGTTCGTGGCTGACCGCCTGCTGGTGGCTCTCGGCAACGAG 43104 Query 61837 CGGATCTATAATACG----AAAAACCCATTTGATTTCATGGACATGATTTCGCTGGATGG 61892 | ||| | || | ||||| || || |||||||| | || || |||| || Sbjct 43103 AAGGTCT----TCCGCGTCACCAACCCCTTCGACTTCATGGAGAACATCTCCCTGGGCGG 43048 Query 61893 CAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTATCA 61931 |||||| || || |||||||| || || ||||| || || Sbjct 43047 CAAGACCAACTTCTTCGAGAAGCGCGTCGGCGAGTACCA 43009 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397567612371200