Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Graphilbum_20fragrans_20[genbank_20GCA_5F001513895.1_202016-01-13] 80 sequences; 34,270,891 total letters Query= NC_027867.1 Length=651523 Score E Sequences producing significant alignments: (Bits) Value seq31 154 6e-32 seq13 100 1e-15 seq7 87.8 7e-12 >seq31 Length=224113 Score = 154 bits (170), Expect = 6e-32 Identities = 358/526 (68%), Gaps = 23/526 (4%) Strand=Plus/Minus Query 448639 GGCGCCGTAGGACTTGAAGGAGACGCGCTCCATGTCGCCCAATCGGAGCCCGCCGTGTCG 448698 ||||||||||| ||| | || |||||||||| ||||| | || || ||||||| || Sbjct 199266 GGCGCCGTAGGCGATGAGGCAGTCGCGCTCCATCTCGCCGAGGCGCAGGCCGCCGTCGCG 199207 Query 448699 CAACTTGCCCTCGGTGGGCTGCCGCGTGAGGAGCGAGTACGGTCCCCTCTGC-CGCGTGT 448757 | ||||||||||||||| || ||||||| | | ||| ||||| || |||| || Sbjct 199206 GGAGCGGCCCTCGGTGGGCTGGCGGGTGAGGATGGCGCGCGG-CCCCTTGGCGCGCGAGT 199148 Query 448758 GCATCTTCTCCGAGGCCAGTTGCTTGAGGCTCTGGAAGAAGAAGGGCGCGTAGAACATGC 448817 ||||||| ||| | ||| |||||||||| |||| || ||| |||| ||| ||| | | Sbjct 199147 GCATCTTGTCCTGGACCATGTGCTTGAGGCGCTGGTAGTAGATGGGCCCGTTGAAGACGT 199088 Query 448818 GGCACGGCATCATCTCGCCCGTCTGGCCGTCCGTAAAGATCGTC-TTGCCCTCGGGCTCG 448876 | | | | |||||| || |||| || ||| | ||| ||||| | || | Sbjct 199087 AGGCCTCGAGCGGCTCGCCGGTGGTGCCGGAGGTGAAG-TAGTCCTTGCCGT---GCCAG 199032 Query 448877 ATCATGCCCCTCTCCTCCATGTAGTC---CATGAGCTCGGCCACGGAGAGGTC-CGAAAA 448932 | ||| | | | | | | | |||| |||| |||| | || || || Sbjct 199031 GAGAAGCCGCGGGCGACGAGCTCGGCGCCCATGGCCTCG---ACGGGGTGGGAGCGGAAG 198975 Query 448933 G----GCCGT-GCCGTCCT-GCGGCAAGCCGCTCTCACAGCCCGTGATGGCCTG-GAGGG 448985 | ||||| ||||| | ||||| | || || || | | ||| | |||| Sbjct 198974 GCGTCGCCGTAGCCGTAGTCGCGGCGGCCGGCGACGACGGC--GGCCTTGCCGGTGAGGC 198917 Query 448986 CCTCGAGCAACATGGCGTAGGTCATGCGCGACGGGTAGGCATGCGGGTTCATGATGATGT 449045 ||||| || | || || |||||||||||| |||||| | |||||||||||||| |||| Sbjct 198916 ACTCGAACAGCTTGCCGACGGTCATGCGCGAGGGGTAGCCGTGCGGGTTCATGATCATGT 198857 Query 449046 CGGGCGTCTCGCCGGCCGCGTTGAAGGGCATGTCCTCGGGGTTGACCACCAGGCCGTTGA 449105 |||| | ||||| || | |||||||||||||| ||| ||| | | |||| || Sbjct 198856 CGGGGCACACGCCGCTGTCGCTAAAGGGCATGTCCTCCTGGTCGACGATGATGCCGACGA 198797 Query 449106 CGCCCTTCTGGCCGTGGCGGCTGCAGAACTTGTCCCCCTGCTCGGG 449151 ||||||| ||||||||||| |||||||||| || |||||| Sbjct 198796 CGCCCTTTTGGCCGTGGCGCGACGAGAACTTGTCGCCGATCTCGGG 198751 >seq13 Length=672118 Score = 100 bits (110), Expect = 1e-15 Identities = 107/139 (77%), Gaps = 2/139 (1%) Strand=Plus/Plus Query 449005 GGTCATGCGCGACGGGTAGGCATGCGGGTTCATGATGATGTCGGGCGTCTCGCCGGCCGC 449064 |||||||||||| ||| ||| |||||||| ||||||||||||||||| ||| ||| Sbjct 570614 GGTCATGCGCGAGGGGATGGCGTGCGGGTTGATGATGATGTCGGGCGTGATGCCCTCCGT 570673 Query 449065 GTTGAAGGGCATGTCCTCGGGGTTGACCACCAGGCCGTTGACGCCCTTCTGGCCGTGGCG 449124 | | ||||||||||| |||| | | | || |||| || |||||| || |||||||| Sbjct 570674 GGTAAAGGGCATGTCTTCGGAGCGGTACGTCACGCCGATGGTGCCCTTTTGCCCGTGGCG 570733 Query 449125 -GCTGCAGAACTTGTCCCC 449142 | ||| |||||||| || Sbjct 570734 CGACGCA-AACTTGTCGCC 570751 >seq7 Length=807244 Score = 87.8 bits (96), Expect = 7e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 349073 GCGTCGAGAATCTCCTTGAGTCTGGGCATGCCCAGGGTCACGTTCTTGGCCGCGACGCCG 349132 |||| || |||||||||| | |||| |||| || | | || || |||| |||||| Sbjct 309480 GCGTTGATGATCTCCTTGATGCGCGGCACGCCCTCCGTGATGCTCATGCCCGCCACGCCG 309539 Query 349133 GCAAAGTGGAAGGTCTGGAGGGTCAACTGCGTGAGGGGCTCGCCGATGCACTG 349185 ||||||||||| |||| ||| |||| ||||||| ||||||||||| |||| Sbjct 309540 GCAAAGTGGAACGTCTTGAGCGTCATCTGCGTGCCCGGCTCGCCGATCGACTG 309592 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2084737011023840