Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herpotrichiellaceae_20sp._20UM238_20[genbank_20GCA_5F000315175.1_202 012-11-26] 217 sequences; 28,364,325 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq123 250 2e-61 seq85 181 8e-41 >seq123 Length=109856 Score = 250 bits (276), Expect = 2e-61 Identities = 1206/1882 (64%), Gaps = 58/1882 (3%) Strand=Plus/Minus Query 65078 TCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGTC 65137 || || ||||| ||||| | || ||| ||| |||| | ||||||||||||||| ||| Sbjct 49211 TCAACGGTGAATTGGATTGGCGCAGAAGCAGCCATGGTTCGAAGATAGTACATGCCAGTC 49152 Query 65138 TTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGC--ATAATTCGGCT 65195 ||||| || ||| || ||| ||||| || | | || |||| || || || | Sbjct 49151 TTGAGACCCATTTTCCAGCCAGCGAAGTGCATAGAAG-TGATCTTGCCCATGGTT-GGTT 49094 Query 65196 CGGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCA 65255 | || ||| || ||||||||||| |||||| ||| | ||| ||||| || |||| Sbjct 49093 CCTTCAGATGAATGTTCAACGACTGTGACTGATCAATGAAGGCACCTCGATCAGCGGCCA 49034 Query 65256 TGTCAATGATACGACGTCCCGATATCTCCCAGACGGTCTTGTACAG-GCGACGTACCTCA 65314 | | |||||| | || ||||||||||| |||||||| || || | | || Sbjct 49033 TCTGGATGATAGTTCTCTGAGAGATCTCCCAGACAGTCTTGTAGAGTGCTTTG-ATGTCG 48975 Query 65315 ATTGGAATCTCCTCAATGTCCTGGACTGAACCACGACGTGCAATAATGCGATTACGCATC 65374 ||||||| | | || ||| | |||||| | ||||| || | || ||| Sbjct 48974 GTTGGAATGTTTGGTACGTTCTGAATTGAACCGCCCTCGGCAATGATTCTGTTCTTCATG 48915 Query 65375 GACTCTGACCACAAACCCAAATCGATAAGATGTTGAACCAAGTGACGATTGATGACTTGG 65434 || ||||||| || | ||| | |||| || | || |||||| ||| || Sbjct 48914 TTGTCCGACCACAGGCCAAGATCAACGAGATCTTTGAGCAGCCATGGATTGACGACCTGA 48855 Query 65435 AACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGATTCA 65494 || ||||| | | ||||||||| ||||||||||| || || || ||| ||||| Sbjct 48854 AATTCGCCTGCTAACACACGACGGGAGTAGATGTTGGATGTATATGGCTCGAAGCATTCA 48795 Query 65495 GTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGAGTTT 65554 | ||||| | || || | ||||| || || |||||||| ||||| | | || ||| Sbjct 48794 TTATTGCCCAATATCTGCGACGTAGAGGCGGTCGGCATGGGTGCGACAAGAAGAGAATTT 48735 Query 65555 CGCAATCCGTTCATTTCAATGTTGTGACGCAATTCGTCCCAGTTCCACA--TCGGTTTAT 65612 || | || | | |||| ||| ||| | ||||||| ||| | || ||| | Sbjct 48734 CGAACACCATACTGAGCAATCTTGGCTTTCAAGGCCTCCCAGTCCCAAAGGTCTGTTGGT 48675 Query 65613 CGTC-GACATCCACGGGCCACATATCCTGTTGCAGGG-TTCCGATACTGGCCGGTGAACC 65670 ||| ||| ||| || | | |||| || | || || | ||| | | Sbjct 48674 -GTCAGACC-CCAGAGGTCGTA----CTGTAGCTGACCTTGAGAAATGGGCGAGCCCTCA 48621 Query 65671 GAGGAAACTATCGTACACTCCCTCCTCCTTGGCAAGTTGACA-GCTGGTCTCGAGTGCGG 65729 ||| | ||||| || ||||| ||||| | ||| | | | || || || | Sbjct 48620 TAGG----TTTCGTATGGACCAAGTTCCTTCGCAAGGTCACATGAAGCTGTC-AGAGCTG 48566 Query 65730 CAAAATAAATGGTCTCGAAAATGCGTCGATTAAGTTCACGTGCCTCATCGCTCTCGTACG 65789 | || || |||||||| || | || || | | ||| || ||| ||| Sbjct 48565 CGTGGTAGATAGTCTCGAATATTTGAATGTTGAGCTGTCTTGCTTCGGGAGAATCGAACG 48506 Query 65790 GCATACCCATCAGGACAA---AAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGAC 65846 ||| | | ||| ||| ||| || || || |||||||| |||| ||| ||||| | Sbjct 48505 GCAGTC---TAAGGGCAAGGAAAGCATCAGCAAGGCCTTGAACACCAAGACCAATGGGTC 48449 Query 65847 GATGACGCAAATTGGAACGTCTCGCCTCAGGTACAGGGTAGTAATTGATATCGATAATGC 65906 | || | || ||| |||||| || || || |||||||| ||||| ||||| || Sbjct 48448 GGTGTCTGAAGTTGCTCTTTCTCGCTTCCGGGACGGGGTAGTAGTTGATCTCGATGATCT 48389 Query 65907 GATTCAAATTGCGTGTCACCACATGCACGATA-CGTCGCAATTGTTCGAAATCAAAATGT 65965 |||| || |||| || || | || ||| ||| | | | || ||| | || Sbjct 48388 TGTTCAGGTTCTTAGTCATGACCTGGATGACCTCGT-GCAGTCGGCCAAAGTCATATTG- 48331 Query 65966 TTAGGACGATCGGGAGTGCCGGACACCACAAACTTGGGAAGGGCAAGAGATGCGAGGTTG 66025 || ||| | | || || | ||| ||| || | ||| ||| || | ||| Sbjct 48330 -----ACCTTCG--ACTT--GGTCAACG-AAAGATGGCAAAG-CAACAGAAGCCAAATTG 48282 Query 66026 CAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTGCAG 66085 ||||| || | ||||||||| ||||| ||||| | ||||| ||||||| || | | Sbjct 48281 CAGACGGCGACCTCGTCAGGGGCGGTGTACTCAATGATTTCTGTGCACAAGTTGGAGGAC 48222 Query 66086 CGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATCATG 66145 ||||||||||| |||| |||||||| || | ||||| || |||||||| | |||| Sbjct 48221 TTGATGGTGCCCAAGTTCTTCTGATTACTTTTTCTGTTGCAGGCGTCCTTGTAGAGCATG 48162 Query 66146 TACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTC 66205 | || | || |||||| |||| ||| | |||||| | ||| | ||||||| Sbjct 48161 AATGGGTTTCCAGTCTCAGTCTGGGCCTCCAAGATGGCATACCACAACTTCTGTGCCTTG 48102 Query 66206 ACCGTACGTACCGCCCTACCTTTGCGT-TCGTAATGTTCGTAGAGGTGTTCGAAGGATTC 66264 | || || | ||| | || | | || || | ||| | || ||||| || Sbjct 48101 ATTGTCTGT-CGGCCTCGGCCTTCCTTCTCATACTTCTCGAACAGAGCCTCGAACTCCTC 48043 Query 66265 ACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAATCACCATC 66324 ||| | || || | || |||| | || || || | || | ||| || || | Sbjct 48042 ACCGTAGCAGTCAGATAAACCTGGAGCTTCGTTGGGGCAGAAGAGAGTCCAGTCTCCGTT 47983 Query 66325 CTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGC 66384 | || || || ||| || ||||| || ||||||| ||||| || | ||| || || Sbjct 47982 TTTCTCAACCCGCTTCATGAACAGATCTGGAGTCCAGAGAGCGTAAAACAAATCACGAGC 47923 Query 66385 TCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATG 66444 || || || | ||||| || || || | || || ||||||||| ||||| || Sbjct 47922 ACGAACTTCTTCCTTTCCGTGGTTCTTCCGGAGGTTCAGCCACTCAAAGACATCGGCGTG 47863 Query 66445 CCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTA 66504 ||| || || ||||| | ||| || | || | ||| ||| || ||||||||||| Sbjct 47862 CCAGGGCTCAAGGTAAACGGCAAAGGCACCAGGTCTCTTGTTGCCGCCCTGGTCGACGTA 47803 Query 66505 GCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGT 66564 ||||| ||||| ||||| || | ||| || || || ||||| ||| |||| || || Sbjct 47802 TCGAGCAGTATTGTCAAAGACTCGGAGCATAGGGACAAGGCCGTTTGATGTGCCGTTTGT 47743 Query 66565 GCCGTCGATGGGGGATCCTCGTGCCCGTATATCGTGAACATTCAGACCAATACCACCGGC 66624 ||| |||| ||| || || || || | ||| || |||| |||||||| ||||| Sbjct 47742 GCCTGCGATATAGGAGCCAGTCGCTCGAATTTTGTGGACGTTCAATCCAATACCGCCGGC 47683 Query 66625 CGTCTTCGAGATGGCAGCACAATCGGCC---ACTGTCCGGAATATGCCGTCAATGGAGTC 66681 |||| ||||| || || || | | || | | || || || || ||||| Sbjct 47682 ATTCTTTGAGATCATGGCGCA---GGTCTTTAGCGTATCGTAGATTCCCTCGATCGAGTC 47626 Query 66682 ACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGTGTGGCGGCCGAGAA 66741 |||| ||| | | | | ||||| | ||| | || |||||| | || ||| Sbjct 47625 CTCCTTCATGTCGATCAAGAAACATGATGACATTTGAGCATTTGGTGTGCCTGCATTGAA 47566 Query 66742 GAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGACATGTAATTGTACGTCTCGATGAC 66801 ||||||||| | |||||| || || | | |||||| |||||| ||||| ||||| Sbjct 47565 GAGGGTGGGCGAAGCGTGTGTGAACATCTTCTGGGACATGAGATTGTATGTCTCAATGAC 47506 Query 66802 AGCATCAATGTTTTCGCCATGAATCCCGAGTG-CACATCGCATCAGGAGGTATTGAGGCC 66860 || || | ||| |||||||| || | | ||| |||||||| | || || || | Sbjct 47505 CTTCTCGATATCTTCTCCATGAATGCCAACAGACAC-GCGCATCAGCATGTGCTGTGGTC 47447 Query 66861 GTTCGACCAGCCGATCCTTG--ATATGCATTAAG-TAGGAGCGTTCCAGGGTCTTGATAC 66917 ||| ||| | | |||| |||| ||| || || | |||||| ||||||| | Sbjct 47446 TTTC--CCA-TGGCTTCTTGTCATATTTGAGAAGATATGATCTTTCCAGTGTCTTGAAGC 47390 Query 66918 CAAAGTACGAGTAATTGAAATC 66939 |||| || ||| || ||||| Sbjct 47389 CAAAATAGTTGTAGTTAAAATC 47368 >seq85 Length=245923 Score = 181 bits (200), Expect = 8e-41 Identities = 551/841 (66%), Gaps = 14/841 (2%) Strand=Plus/Minus Query 61099 TACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATG 61158 ||||| || || ||||| ||||||||||| | || || ||||| |||| ||||| | Sbjct 84986 TACAAGAAAGCCGAAGCCTCCTTCTGGACCGCCGAAGAAGTCGACCTGTCGAAAGATCTC 84927 Query 61159 AATGACTGGGAGC----GTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGC 61214 | |||||| | | | | | ||| | |||| | ||| || || || | || Sbjct 84926 CACGACTGGCACCACAAGCTCAACGAT-GACGAACGTTACTTCGTTTCCCACGTCCTCGC 84868 Query 61215 GTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGA 61274 ||||| ||||| |||||||| |||||||| ||||| | | || || ||| | || Sbjct 84867 TTTCTTCGCCGCCTCGGACGGCATCGTCAACGAGAACCTTGTCGAGCGCTTCTCCGGCGA 84808 Query 61275 GGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCA 61334 || ||||| | || || || || || || ||||||||||| ||||| || |||| Sbjct 84807 AGTCCAAGTCCCCGAAGCCCGCTGCTTTTATGGCTTCCAGATCATGATGGAAAACATCCA 84748 Query 61335 CTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACG 61394 | || |||||| ||||||| || || ||||| | |||| | || | || Sbjct 84747 CAGCGAAATGTACTCACTTCTCATTGACACATACATTAAAGAGCCAAAGCAAAGACAATA 84688 Query 61395 ATTGTTCAATGCCATCGAGACGATACC-GGCGGT-GAAGCGGAAAGCGGATTGGGCCTTC 61452 | ||| | |||||||| || || || || | ||| |||||| || ||||| || Sbjct 84687 CCTCTTCGACGCCATCGATACAATTCCTTGCATTAGAA--AGAAAGCTGAATGGGCTCTC 84630 Query 61453 AATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTC 61512 ||||| | | | | | || |||| | || || | || ||||| | || Sbjct 84629 CGCTGGATTTCAGATCGAGAGTCCACCTTTGCCCAGCGTCTGGTCGCCTTTGCCGCTGTG 84570 Query 61513 GAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTT 61572 || ||| | || ||| || || || ||| | ||||| ||| | ||||| || || || Sbjct 84569 GAAGGTATCTTCTTCTCCGGCTCCTTCGCCTCCATCTTCTGGCTCAAGAAGCGAGGTCTC 84510 Query 61573 ATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGAT 61632 |||||||| || |||||| ||| || | || || || |||||||||||||| || Sbjct 84509 ATGCCCGGCCTTACCTTCTCCAACGAACTTATCTCCCGGGACGAGGGCATGCACACCGAC 84450 Query 61633 TTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGT 61692 ||||| |||| || ||| | || | || || || |||| | | | Sbjct 84449 TTTGCGTGCCTGCTGCTC--TCGC-ACCTTAACCACCGCCCCTCAAAGGAACTTATCCAG 84393 Query 61693 GAGATTGTTCGT-GAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGT 61751 | | | |||| ||||| || ||||| || ||||| || || || || | ||||| Sbjct 84392 GCCA-TCATCGTCGAGGCCGTCCAGATCGAGCAAGAATTCCTCACCGAGGCGCTCCCCGT 84334 Query 61752 CTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCG 61811 | || | |||||||| | || ||| |||||| ||||| || ||||||||||| Sbjct 84333 TGCTCTACTGGGCATGAACTCGAAGCTCATGAAGCAGTACATTGAGTTCGTTGCCGACCG 84274 Query 61812 TCTGTTGGTCGATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTCAT 61871 |||||||| | |||||| | | ||| || | || || ||||| || || Sbjct 84273 GCTGTTGGTAAGTATGGGTAACCCGAAGTACTACAAGGTCACCAATCCGTTTGACTTTAT 84214 Query 61872 GGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTATCA 61931 ||| | || || || | |||||||| ||||| |||||||| || || || ||||| || Sbjct 84213 GGAGAACATCTCTCTAGCGGGCAAGACCAATTTCTTCGAGAAGCGAGTGGGTGACTACCA 84154 Query 61932 A 61932 | Sbjct 84153 A 84153 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397566948556880