Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20bhutanensis_20[genbank_20GCA_5F002018275.1_202017-03-03] 448 sequences; 26,695,738 total letters Query= NC_032108.1 Length=589068 Score E Sequences producing significant alignments: (Bits) Value seq46 102 3e-16 seq446 86.0 2e-11 >seq46 Length=346326 Score = 102 bits (112), Expect = 3e-16 Identities = 214/317 (68%), Gaps = 4/317 (1%) Strand=Plus/Minus Query 12731 AGAACATCGTAAAAGAAAACTTTCATGCCTAGACACTCTGCTAGGACAGAGACCTGAGAA 12790 ||||||||||| ||| || |||||||| | | ||| || || || || | ||| | | Sbjct 53223 AGAACATCGTAGTAGATGACGTTCATGCCCATAGCCTCAGCGAGAACGGAAAGCTGGGCA 53164 Query 12791 CCAATGTTACCATAACCTACTATACCTAGGGTCTTTCCTCTAACTTCACGGCAACCTTGA 12850 ||||||| || ||||| | ||||| |||||||| || | | || | ||| |||| Sbjct 53163 CCAATGTGGCCGTAACCGATGATACCAAGGGTCTTGCCACGGATCTCCCAGCA--CTTGT 53106 Query 12851 --GAAGTCTTGTTCCAAATGCCTTGGTGTAGTTCTTTGTTTCTATCTCCAACCTGACGAG 12908 || ||||||||| | || |||| | || | | || |||| ||| |||| Sbjct 53105 TGGAGACCTTGTTCCAGGTACCACGGTGCATCTCAAGGGAGCGGTCACCAAGCTGGCGAG 53046 Query 12909 AAAGATTAATTAGTTGTCCTATGATGAGCTCTGCCACGCTTCTAGTGTTGCAAAAGGGAG 12968 ||| ||| | | || |||| |||||| || ||| | || |||| |||||||| Sbjct 53045 CCAGAGAAATGATCTCACCGATGACGAGCTCAGCAACGGAACGAGAGTTGGCAAAGGGAG 52986 Query 12969 AATTAAAGACTGCAATGCCTAGTTTGGTAGCCATGTCTAGATTAACCTGATCGTAACCAA 13028 | || ||||| ||||| || | |||| || || || | ||||| | ||||| Sbjct 52985 AGTTGAAGACGGCAATACCGCGCTTGGCGGCGTATTCGAGGTCGACCTGGTTAGTACCAA 52926 Query 13029 TGCAGAAGCATCCTATG 13045 |||||||||| || ||| Sbjct 52925 TGCAGAAGCAACCGATG 52909 >seq446 Length=87972 Score = 86.0 bits (94), Expect = 2e-11 Identities = 108/146 (74%), Gaps = 2/146 (1%) Strand=Plus/Plus Query 364425 CAATAGTCATACGAGAGGGAATGGAGAGAGGGTTGATGATGATGTCAGGCACCATGCCGT 364484 |||| ||||||||||| ||||||| | | ||||| |||||||| || || || || | Sbjct 32098 CAATGGTCATACGAGAAGGAATGGCGTGGGGGTTAATGATGATATCTGGAGTGATACCCT 32157 Query 364485 CAGCGGTAAAGGGCATATCTTC-GGGAGGAACGATGAGACCAATGGTTCCCTTTTGCGCA 364543 || ||||| ||||| || || | | | | ||| ||||||||| ||||| || | Sbjct 32158 CACGAGTAAAAGGCATGTCCTCTTGTCTGTAAG-TGACACCAATGGTACCCTTCTGTCCG 32216 Query 364544 TAGCGAGAAGCAAACTTGTCGCCAAT 364569 | || |||||||||||||| ||||| Sbjct 32217 TGACGGGAAGCAAACTTGTCACCAAT 32242 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1884875580752064