Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20omanensis_20[genbank_20GCA_5F000833645.1_202015-02-09] 6,542 sequences; 31,125,221 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq5785 630 3e-178 >seq5785 Length=8032 Score = 630 bits (698), Expect = 3e-178 Identities = 542/662 (82%), Gaps = 20/662 (3%) Strand=Plus/Minus Query 28 AGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTT 87 ||||||||||||||||||||| |||||||||||| ||||||||||||||||| || |||| Sbjct 1315 AGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCTAAATGGGAGGTATATCTCTT 1256 Query 88 CTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAA 147 |||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1255 CTAAAGCTAAATATAGGCTAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAA 1196 Query 148 AGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAAC 207 ||||||||| ||||||||||||| ||||||||||||||||||||||||||||| | || Sbjct 1195 AGCACTTTGAAAAGAGAGTTAAACAGCACGTGAAATTGTTGAAAGGGAAGCGCCTATGAC 1136 Query 208 CAGACTTG---CCCGCAGTTGCTCAACCGGCCCCTCGGCCGG-TGCACTCTTCTGCGGTC 263 |||||||| | ||||| | |||| | | | ||||| | | | Sbjct 1135 CAGACTTGTTTCTATCAGTTTTGGTAGTTT----TCGGACTGCTTTACTCTGTTA-GTAC 1081 Query 264 AGGCCAGCATCAGCTCG--GGCGGTCGGATAAAGGCCCCGGGAATGTGGCCCCCTTCGGG 321 |||||| |||||| | | | ||| ||| ||||| ||||||||||| || || || Sbjct 1080 AGGCCAACATCAGTTTGTTGTCGG--GGAGAAAGGTTTAGGGAATGTGGCTCC--TCCGG 1025 Query 322 GGGTGTTATAGCCCGGGGTGGAATGCGGCCCGCCTGGACTGAGGTCCGCGCTCCGGCTAG 381 | |||||||||||| ||| | || | |||||||| ||||||| |||| || Sbjct 1024 GAGTGTTATAGCCCTTTACATAATACCCTTCGGC-AGACTGAGGACCGCGCTTCGGCAAG 966 Query 382 GATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACAT 441 |||| |||||||||||| | |||| ||||||||| |||||||||||||||||| | | | Sbjct 965 GATGTTGGCGTAATGGTCATCAGCGACCCGTCTTGAAACACGGACCAAGGAGTCAACCTT 906 Query 442 CTATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAGTGAACGGAGGTGGGAAC 501 ||||||||||||||||||| |||||| |||||||||||| ||||||| ||||| || Sbjct 905 ATATGCGAGTGTTTGGGTGTTAAACCCCAGCGCGTAATGAACGTGAACGTAGGTGAGA-- 848 Query 502 CCGTGAGGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATA 561 | || ||| ||||||||||| ||||||| ||||||||||||||||||||||||| Sbjct 847 --GCTTCGGCGCATCATCGACCGATTCTGATGTTCTCGGATGGATTTGAGTAAGAGCATA 790 Query 562 GCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTC 621 | | |||||||||||| |||||||||||| || |||||||||||||||||||||||| Sbjct 789 TAGGGTTGGACCCGAAAGAAGGTGAACTATGCTTGTATAGGGTGAAGCCAGAGGAAACTC 730 Query 622 TGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGC 681 |||||||||||||||||||||||| ||||||||||||||||||||| || | || ||||| Sbjct 729 TGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATATGAGCATGGGGGC 670 Query 682 GA 683 || Sbjct 669 GA 668 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079859674100