Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20omanensis_20[genbank_20GCA_5F000833645.1_202015-02-09] 6,542 sequences; 31,125,221 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq6498 269 2e-67 seq6529 185 7e-42 >seq6498 Length=96284 Score = 269 bits (298), Expect = 2e-67 Identities = 643/967 (66%), Gaps = 20/967 (2%) Strand=Plus/Plus Query 66002 GGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACA 66061 || || ||||| ||||| | |||||| ||||| | ||| ||||||||| ||||||| | Sbjct 27666 GGGAGAGCAAGCGATGCCAAGTTGCACACAGCGACCTCATCAGGAGCGCAGTACTCGATA 27725 Query 66062 ATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGA 66121 || || ||||| || || | ||| || || |||| |||| ||| ||||||||||| Sbjct 27726 ATCTCAGTGCAAAGGTTGGAACTGCGAATAGTTCCCAGGTTCTTTTGGTTACTCTTGCGG 27785 Query 66122 TTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATG 66181 ||||| ||||||||||| |||| | || | || ||||| || | || | ||| Sbjct 27786 TTGCAGTGATCCTTGTACAACATGAAAGGGTTACCAGTCTCCGTCTGAGCTTCCAGAATG 27845 Query 66182 GCGTGCCAAAGAGCGCGTGCCTTCACCGTACGTACCGCC-CTACCTTTGCGTTCGTAATG 66240 || | ||| || | ||||| | ||| | || ||| | |||| | ||||| | Sbjct 27846 GCATACCACAGCTTCTGAGCCTTGATGGTAAG-ACGGCCACGTCCTTCCTGCTCGTACTT 27904 Query 66241 TTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGG 66300 |||| || ||||| ||||| | || | || | || |||| || || Sbjct 27905 GACGTAAAGAGCCTCGAATTCCTCACCGTAGCAATCAGCCAAGCCAGGGCACTCGTTGGG 27964 Query 66301 ACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCA 66360 ||||| || | ||| || || | || || ||||| ||| || | ||||| ||||| Sbjct 27965 GCACATGAGGGTCCATTCGCCGTTCTTCTCAACACGCTTCATGAACAAGTCAGGGATCCA 28024 Query 66361 GAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTC 66420 ||||| ||| | |||||| || || |||||| | ||||| || || || | ||| Sbjct 28025 CAGGGCAAGGAACAAATCGCGAGCGCGAATCTCCTCCTTACCGTGGTTCTTCCGAAGGTC 28084 Query 66421 GAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACG 66480 ||||||||||| | || || ||||| || |||||||| ||||| || | || ||| Sbjct 28085 AAGGAACTCAAACACATCAGCGTGCCACGGCTCCAGGTAAATGGCAAAAGCACCAGGACG 28144 Query 66481 TTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTAC 66540 ||| |||||| || |||||||| || || |||||||| ||||||| ||| || || Sbjct 28145 CTTGTTGCCACCCTGATCGACGTAACGGGCAGTGTTGTTGAACACACGCAGCATAGGAAC 28204 Query 66541 GAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCGTG 66600 | ||||| || | || || |||||| | ||| ||| || || || ||| ||| Sbjct 28205 AATACCGTTCGAGGTACCGTTAGTGCCGGCAATGTAGGAACCAGTAGCACGGATACGGTG 28264 Query 66601 AACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAATCGGCC---ACTGT 66657 ||| || ||||| |||||||| ||| |||| ||||| |||||| || | | || Sbjct 28265 AACGTTGAGACCGATACCACCCGCCATCTTGGAGATCATAGCACA---GGTCTTGAGGGT 28321 Query 66658 CCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTG 66717 | || || || || ||| |||| ||| | | | |||| ||| ||| || Sbjct 28322 ATCATAGATACCTTCGATACTGTCCTCCTTCATGTCTACCAAGAAGCAGGAAGAAAGCTG 28381 Query 66718 GGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGA 66777 || | || || |||| ||||||||| || | ||||| || ||| | | || || Sbjct 28382 AGGCTGAGGGGTACCGGCGTTGAAGAGGGTAGGAGAGGCGTGAGTGAAGAACTTGCTCGA 28441 Query 66778 CATGTAATTGTACGTCTCGATGACAGCATCAATGTTTTCGCCATGAATCCCGAGTGCACA 66837 |||| ||||| || || | ||| |||| || || || || |||| ||| Sbjct 28442 CATGAGGTTGTAAGTTTCCAGAACACGCTCAACATTATCACCCCAGATACCGACAGCAAC 28501 Query 66838 TCGCATCAGGAGGTATTGAGGCCGTTCGACCAGC---CGATC---CTTGATATGCATTAA 66891 ||||| | | || ||||| || ||||| | | | ||| ||||| | | Sbjct 28502 ACGCATAATCATGTGCTGAGGACGCTCGACAATCTTGCCATCAAGCTTGAGA------AG 28555 Query 66892 GTAGGAGCGTTCCAGGGTCTTGATACCAAAGTACGAGTAATTGAAATCGTTAGCATGCAC 66951 ||| || | |||||||||||| | ||||||||| ||| ||||| || ||| || Sbjct 28556 GTAAGATCTTTCCAGGGTCTTAAATCCAAAGTACTGGTAGTTGAAGTCACGGTCATAGAC 28615 Query 66952 GATGGCC 66958 ||||||| Sbjct 28616 GATGGCC 28622 Score = 129 bits (142), Expect = 5e-25 Identities = 330/494 (67%), Gaps = 10/494 (2%) Strand=Plus/Plus Query 65078 TCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGTC 65137 || || ||||||||||| | | |||||| |||| ||| | || |||||||| || ||| Sbjct 26760 TCAACAGTGAACTGGATAGGAGCAGCAGCGGCCTGGGTACGCAGGTAGTACATACCCGTC 26819 Query 65138 TTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTG--CATAATTCGGCT 65195 ||||| ||| |||| | || ||||| | || |||| ||| ||| || || | Sbjct 26820 TTGAGACCAAGCTTCCAACCCGCAAAGTGCAT-GCTGGTAATCTTGCCCATGGTT-GGGT 26877 Query 65196 CGGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCA 65255 | || || || |||||||||||| |||||| || | |||||| || ||||||| Sbjct 26878 CCTTCATGTGAATGTTCAACGACTGAGACTGATCAATAAAGGCACCACGGTCGGCAGCCA 26937 Query 65256 TGTCAATGATACGACGTCCCGATATCTCCCAGACGGTCTTGTACAGGCGACGT-ACCTCA 65314 | | || | | ||| || |||||||| || |||||||| | | ||| | | || Sbjct 26938 TCTGAACAACAGTACGCTGAGAAATCTCCCAAACAGTCTTGTA-AAGAGACTTGATGTCC 26996 Query 65315 ATTGGAATCTCCTCAATGTCCTGGACTGAACCACGACGT--GCAATAATGCGATTACGCA 65372 ||||| |||| ||||| |||| || || | ||| ||||| || || Sbjct 26997 GCCGGAATGCTGGGGATGTTCTGGATAGAAC--CGTTGTCCGAAATGATGCGGTTCTTCA 27054 Query 65373 TCGACTCTGACCACAAACCCAAATCGATAAGATGTTGAACCAAGTGACGATTGATGACTT 65432 | || ||||||| ||| | || | ||||| ||| ||| | | |||| || | Sbjct 27055 TGTTGTCCGACCACAGACCAAGGTCAACAAGATCGCGAAGCAACCAAGGGTTGACAACCT 27114 Query 65433 GGAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGATT 65492 ||||||| || | || ||||| || || ||||| || ||| || || ||| | | Sbjct 27115 GGAACTCACCAGCCAACACACGGCGCTGGTAAATGTTCGAAGTGTAAGGCTCGAAGCACT 27174 Query 65493 CAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGAGT 65552 | |||| || ||||| || | ||| || ||||| |||||||| || | | || |||| Sbjct 27175 CGTTGTTACCCAGAATCTGAGAAGTTGACGCAGTGGGCATGGGCGCCAGAAGCAGCGAGT 27234 Query 65553 TTCGCAATCCGTTC 65566 | || | |||||| Sbjct 27235 TGCGAACACCGTTC 27248 >seq6529 Length=132804 Score = 185 bits (204), Expect = 7e-42 Identities = 594/915 (65%), Gaps = 20/915 (2%) Strand=Plus/Minus Query 61027 GAACCCCTATTGCAAGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGAT 61086 |||||||| | || || || || |||||||| | ||||| ||| |||| | || Sbjct 77921 GAACCCCTCCTTCAGGAAAACCCCAACCGTTTCGTGCTCTTCCCTATCAAGTACCACGAG 77862 Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146 || |||| |||||||| ||||| || || || |||||||| | |||||| | || | Sbjct 77861 ATCTGGCAAATGTACAAGAAGGCCGAGGCCTCTTTCTGGACCGCCGAGGAGATTGACCTT 77802 Query 61147 TCCAAAGACATGAATGACTGGGAG---CGTTTATCGAGCGGTGAACAACATTTCATTAAA 61203 ||||| || | | |||||| | || | | | | ||| || ||||| Sbjct 77801 TCCAAGGATCTTCACGACTGGAACAACCGCATGACAAAGGATGAGCAGTTCTTCATCTCT 77742 Query 61204 CATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGT 61263 || || | || ||||| |||||||| |||||||| ||||| ||||| || | || ||| Sbjct 77741 CACGTTCTTGCCTTCTTCGCCGCTTCTGACGGTATTGTCAACGAGAACTTGGTCGAGCGT 77682 Query 61264 TTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATG 61323 ||| | ||||| || | | || || ||||| |||||||| |||||||| ||| Sbjct 77681 TTCTCTGCTGAGGTCCAGATCCCCGAAGCCCGTTGCTTCTACGGTTTCCAGATCATGATG 77622 Query 61324 GAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCG 61383 ||||| |||||||||||| ||| | | || || || || ||||||| ||||| || Sbjct 77621 GAGAACATCCACTCGGAGACCTACTCTTTGCTGATTGACACCTACATCAAGGAGCCTGCT 77562 Query 61384 GAACGTGAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGAT 61443 | || | | ||||| ||||| || || || || | || || || || Sbjct 77561 CAGCGCACATACCTCTTCAACGCCATTGACACTATTCCCTGCATTCGCCGCAAGGCCGAC 77502 Query 61444 TGGGCCTTCAATTGGATCACCAGTACAA--CGGCTACATTTGGTGAACGATTGCTGGCAT 61501 |||||| | || ||||| | |||| | | || |||| | || || | || | Sbjct 77501 TGGGCCCTGAAGTGGATTGC--TGACAAGGAGTCGACTTTTGCCCAGCGTCTGGTTGCCT 77444 Query 61502 TTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGA 61561 |||| | || |||||| | || ||| ||| | |||||| | ||||| ||| || | Sbjct 77443 TTGCCGCTGTTGAGGGTATCTTCTTCTCTGGTGCTTTTGCCTCTATCTTCTGGCTGCGCA 77384 Query 61562 AACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCA 61621 | ||||| | |||||||||||||| ||| ||| ||| | || || || || ||||| Sbjct 77383 AGCGTGGTATGATGCCCGGTCTGACTTTCTCCAACGAGCTTATCTCTCGTGATGAGGGTC 77324 Query 61622 TGCATTGTGATTTTG-CTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAG 61680 | || || |||| ||| || || || || || |||| | ||| | || Sbjct 77323 TTCACACGGACTTTGCCTGCCTT-CTTTT------CTCTCACCTGAA-CAACCGCCCCAG 77272 Query 61681 GAGCGTGTGGGT----GAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGAC 61736 | || | | || || | ||| || || || || |||| || || || Sbjct 77271 CAAGCAGTTGATCCAGGACATCATCACTGATGCCGTCGTCATTGAGAAGGAGTTCCTTAC 77212 Query 61737 TGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGA 61796 || ||| | ||| | | || |||| ||||| || || ||| | ||||| || Sbjct 77211 CGAGGCTCTTCCCTGCGCTCTTCTCGGTATGAACGCTGACCTCATGAAGACCTATATCGA 77152 Query 61797 ATTTGTTGCCGACCGTCTGTTGGTCGATTTGGGTATGAAGCGGATCTATAATACGAAAAA 61856 || || ||||||||||| |||||| | | |||| | | | || || | || Sbjct 77151 GTTCGTCGCCGACCGTCTTCTGGTCGCTCTCGGTAACGACAAGGTGTACAAGGCCTCCAA 77092 Query 61857 CCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACG 61916 ||| || || || ||||| | || || || | ||| ||||| || || |||||||| || Sbjct 77091 CCCCTTCGACTTTATGGAGAACATCTCCCTTGGTGGAAAGACCAACTTCTTCGAGAAGCG 77032 Query 61917 TGTAGGCGACTATCA 61931 ||| || || || || Sbjct 77031 TGTTGGTGATTACCA 77017 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397536301654880