Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20omanensis_20[genbank_20GCA_5F000833645.1_202015-02-09] 6,542 sequences; 31,125,221 total letters Query= NC_032108.1 Length=589068 Score E Sequences producing significant alignments: (Bits) Value seq6450 102 3e-16 seq6186 89.7 2e-12 >seq6450 Length=71580 Score = 102 bits (112), Expect = 3e-16 Identities = 214/317 (68%), Gaps = 4/317 (1%) Strand=Plus/Plus Query 12731 AGAACATCGTAAAAGAAAACTTTCATGCCTAGACACTCTGCTAGGACAGAGACCTGAGAA 12790 ||||||||||| ||| || ||||| || | | ||| || || || || | ||| | | Sbjct 11752 AGAACATCGTAGTAGATGACGTTCATACCCATAGCCTCAGCGAGAACGGAAAGCTGGGCA 11811 Query 12791 CCAATGTTACCATAACCTACTATACCTAGGGTCTTTCCTCTAACTTCACGGCAACCTTGA 12850 ||||||| || ||||| | ||||| |||||||| || | | || | ||| |||| Sbjct 11812 CCAATGTGGCCGTAACCGATGATACCAAGGGTCTTGCCACGGATCTCCCAGCA--CTTGT 11869 Query 12851 --GAAGTCTTGTTCCAAATGCCTTGGTGTAGTTCTTTGTTTCTATCTCCAACCTGACGAG 12908 || ||||||||| | || |||| | || | | || |||| ||| |||| Sbjct 11870 TGGAGACCTTGTTCCAGGTACCACGGTGCATCTCAAGGGAGCGGTCACCAAGCTGGCGAG 11929 Query 12909 AAAGATTAATTAGTTGTCCTATGATGAGCTCTGCCACGCTTCTAGTGTTGCAAAAGGGAG 12968 ||| ||| | | || |||| |||||| || ||| | || |||| |||||||| Sbjct 11930 CCAGAGAAATGATCTCACCGATGACGAGCTCAGCAACGGAACGAGAGTTGGCAAAGGGAG 11989 Query 12969 AATTAAAGACTGCAATGCCTAGTTTGGTAGCCATGTCTAGATTAACCTGATCGTAACCAA 13028 | || ||||| ||||| || | |||| || || || | ||||| | | ||||| Sbjct 11990 AGTTGAAGACGGCAATACCGCGCTTGGCGGCGTATTCGAGGTCGACCTGGTTGGTACCAA 12049 Query 13029 TGCAGAAGCATCCTATG 13045 |||||||||| || ||| Sbjct 12050 TGCAGAAGCAACCGATG 12066 >seq6186 Length=25413 Score = 89.7 bits (98), Expect = 2e-12 Identities = 111/147 (76%), Gaps = 4/147 (3%) Strand=Plus/Plus Query 364425 CAATAGTCATACGAGAGGGAATGGAGAGAGGGTTGATGATGATGTCAGGCACCATGCCGT 364484 |||| ||||||||||| ||||||| | | ||||| ||||||||||| || || || | Sbjct 7690 CAATGGTCATACGAGAAGGAATGGCGTGGGGGTTAATGATGATGTCTGGAGTGATACCCT 7749 Query 364485 CAGCG-GTAAAGGGCATATCTTC-GGGAGGAACGATGAGACCAATGGTTCCCTTTTGCGC 364542 | ||| ||||| |||||||| || | | | | | | ||||||||| ||||| || | Sbjct 7750 C-GCGAGTAAAAGGCATATCCTCTTGTCTGTAAG-TAACACCAATGGTACCCTTCTGTCC 7807 Query 364543 ATAGCGAGAAGCAAACTTGTCGCCAAT 364569 | || |||||||||||||| ||||| Sbjct 7808 GTGACGGGAAGCAAACTTGTCACCAAT 7834 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1884728410000006