Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Huntiella_20savannae_20[genbank_20GCA_5F001483325.1_202015-12-30]
361 sequences; 28,542,441 total letters
Query= AAMG01000304.1
Length=683
Score E
Sequences producing significant alignments: (Bits) Value
seq10 630 3e-178
>seq10
Length=389957
Score = 630 bits (698), Expect = 3e-178
Identities = 542/662 (82%), Gaps = 20/662 (3%)
Strand=Plus/Plus
Query 28 AGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTT 87
||||||||||||||||||||| |||||||||||| ||||||||||||||||| || ||||
Sbjct 4715 AGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCTAAATGGGAGGTATATCTCTT 4774
Query 88 CTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAA 147
|||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 4775 CTAAAGCTAAATATAGGCTAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAA 4834
Query 148 AGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAAC 207
||||||||| ||||||||||||| ||||||||||||||||||||||||||||| | ||
Sbjct 4835 AGCACTTTGAAAAGAGAGTTAAACAGCACGTGAAATTGTTGAAAGGGAAGCGCCTATGAC 4894
Query 208 CAGACTTG---CCCGCAGTTGCTCAACCGGCCCCTCGGCCGG-TGCACTCTTCTGCGGTC 263
|||||||| | ||||| | |||| | | | ||||| | | |
Sbjct 4895 CAGACTTGTTTCTATCAGTTTTGGTAGTTT----TCGGACTGCTTTACTCTGTTA-GTAC 4949
Query 264 AGGCCAGCATCAGCTCG--GGCGGTCGGATAAAGGCCCCGGGAATGTGGCCCCCTTCGGG 321
|||||| |||||| | | | ||| ||| ||||| ||||||||||| || || ||
Sbjct 4950 AGGCCAACATCAGTTTGTTGTCGG--GGAGAAAGGTTTAGGGAATGTGGCTCC--TCCGG 5005
Query 322 GGGTGTTATAGCCCGGGGTGGAATGCGGCCCGCCTGGACTGAGGTCCGCGCTCCGGCTAG 381
| |||||||||||| ||| | || | |||||||| ||||||| |||| ||
Sbjct 5006 GAGTGTTATAGCCCTTTACATAATACCCTTCGGC-AGACTGAGGACCGCGCTTCGGCAAG 5064
Query 382 GATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACAT 441
|||| |||||||||||| | |||| ||||||||| |||||||||||||||||| | | |
Sbjct 5065 GATGTTGGCGTAATGGTCATCAGCGACCCGTCTTGAAACACGGACCAAGGAGTCAACCTT 5124
Query 442 CTATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAGTGAACGGAGGTGGGAAC 501
||||||||||||||||||| |||||| |||||||||||| ||||||| ||||| ||
Sbjct 5125 ATATGCGAGTGTTTGGGTGTTAAACCCCAGCGCGTAATGAACGTGAACGTAGGTGAGA-- 5182
Query 502 CCGTGAGGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATA 561
| || ||| ||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct 5183 --GCTTCGGCGCATCATCGACCGATTCTGATGTTCTCGGATGGATTTGAGTAAGAGCATA 5240
Query 562 GCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTC 621
| | |||||||||||| |||||||||||| || ||||||||||||||||||||||||
Sbjct 5241 TAGGGTTGGACCCGAAAGAAGGTGAACTATGCTTGTATAGGGTGAAGCCAGAGGAAACTC 5300
Query 622 TGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGC 681
|||||||||||||||||||||||| ||||||||||||||||||||| || | || |||||
Sbjct 5301 TGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATATGAGCATGGGGGC 5360
Query 682 GA 683
||
Sbjct 5361 GA 5362
Score = 390 bits (432), Expect = 5e-106
Identities = 318/383 (83%), Gaps = 7/383 (2%)
Strand=Plus/Plus
Query 301 GGGAATGTGGCCCCCTTCGGGGGGTGTTATAGCCCGGGGTGGAATGCGGCCCGCCTGGAC 360
||||||||||| || || ||| |||||||||||| ||| | || | |||
Sbjct 5521 GGGAATGTGGCTCC--TCCGGGAGTGTTATAGCCCTTTACATAATACCCTTCGGC-AGAC 5577
Query 361 TGAGGTCCGCGCTCCGGCTAGGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAAC 420
||||| ||||||| |||| |||||| |||||||||||| | |||| ||||||||| |||
Sbjct 5578 TGAGGACCGCGCTTCGGCAAGGATGTTGGCGTAATGGTCATCAGCGACCCGTCTTGAAAC 5637
Query 421 ACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATG 480
||||||||||||||| | | | ||||||||||||||||||| |||||| ||||||||||
Sbjct 5638 ACGGACCAAGGAGTCAACCTTATATGCGAGTGTTTGGGTGTTAAACCCCAGCGCGTAATG 5697
Query 481 AAAGTGAACGGAGGTGGGAACCCGTGAGGGTGCACCATCGACCGATCCTGATGTCTTCGG 540
|| ||||||| ||||| || | || ||| ||||||||||| ||||||| ||||
Sbjct 5698 AACGTGAACGTAGGTGAGA----GCTTCGGCGCATCATCGACCGATTCTGATGTTCTCGG 5753
Query 541 ATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATA 600
||||||||||||||||||||| | | |||||||||||| |||||||||||| || |||
Sbjct 5754 ATGGATTTGAGTAAGAGCATATAGGGTTGGACCCGAAAGAAGGTGAACTATGCTTGTATA 5813
Query 601 GGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATC 660
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 5814 GGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATC 5873
Query 661 GTCAAATTTGGGTATAGGGGCGA 683
||||||| || | || |||||||
Sbjct 5874 GTCAAATATGAGCATGGGGGCGA 5896
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 2079992256550
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |