Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20savannae_20[genbank_20GCA_5F001483325.1_202015-12-30] 361 sequences; 28,542,441 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq10 630 3e-178 >seq10 Length=389957 Score = 630 bits (698), Expect = 3e-178 Identities = 542/662 (82%), Gaps = 20/662 (3%) Strand=Plus/Plus Query 28 AGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTT 87 ||||||||||||||||||||| |||||||||||| ||||||||||||||||| || |||| Sbjct 4715 AGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCTAAATGGGAGGTATATCTCTT 4774 Query 88 CTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAA 147 |||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 4775 CTAAAGCTAAATATAGGCTAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAA 4834 Query 148 AGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAAC 207 ||||||||| ||||||||||||| ||||||||||||||||||||||||||||| | || Sbjct 4835 AGCACTTTGAAAAGAGAGTTAAACAGCACGTGAAATTGTTGAAAGGGAAGCGCCTATGAC 4894 Query 208 CAGACTTG---CCCGCAGTTGCTCAACCGGCCCCTCGGCCGG-TGCACTCTTCTGCGGTC 263 |||||||| | ||||| | |||| | | | ||||| | | | Sbjct 4895 CAGACTTGTTTCTATCAGTTTTGGTAGTTT----TCGGACTGCTTTACTCTGTTA-GTAC 4949 Query 264 AGGCCAGCATCAGCTCG--GGCGGTCGGATAAAGGCCCCGGGAATGTGGCCCCCTTCGGG 321 |||||| |||||| | | | ||| ||| ||||| ||||||||||| || || || Sbjct 4950 AGGCCAACATCAGTTTGTTGTCGG--GGAGAAAGGTTTAGGGAATGTGGCTCC--TCCGG 5005 Query 322 GGGTGTTATAGCCCGGGGTGGAATGCGGCCCGCCTGGACTGAGGTCCGCGCTCCGGCTAG 381 | |||||||||||| ||| | || | |||||||| ||||||| |||| || Sbjct 5006 GAGTGTTATAGCCCTTTACATAATACCCTTCGGC-AGACTGAGGACCGCGCTTCGGCAAG 5064 Query 382 GATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACAT 441 |||| |||||||||||| | |||| ||||||||| |||||||||||||||||| | | | Sbjct 5065 GATGTTGGCGTAATGGTCATCAGCGACCCGTCTTGAAACACGGACCAAGGAGTCAACCTT 5124 Query 442 CTATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAGTGAACGGAGGTGGGAAC 501 ||||||||||||||||||| |||||| |||||||||||| ||||||| ||||| || Sbjct 5125 ATATGCGAGTGTTTGGGTGTTAAACCCCAGCGCGTAATGAACGTGAACGTAGGTGAGA-- 5182 Query 502 CCGTGAGGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATA 561 | || ||| ||||||||||| ||||||| ||||||||||||||||||||||||| Sbjct 5183 --GCTTCGGCGCATCATCGACCGATTCTGATGTTCTCGGATGGATTTGAGTAAGAGCATA 5240 Query 562 GCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTC 621 | | |||||||||||| |||||||||||| || |||||||||||||||||||||||| Sbjct 5241 TAGGGTTGGACCCGAAAGAAGGTGAACTATGCTTGTATAGGGTGAAGCCAGAGGAAACTC 5300 Query 622 TGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGC 681 |||||||||||||||||||||||| ||||||||||||||||||||| || | || ||||| Sbjct 5301 TGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATATGAGCATGGGGGC 5360 Query 682 GA 683 || Sbjct 5361 GA 5362 Score = 390 bits (432), Expect = 5e-106 Identities = 318/383 (83%), Gaps = 7/383 (2%) Strand=Plus/Plus Query 301 GGGAATGTGGCCCCCTTCGGGGGGTGTTATAGCCCGGGGTGGAATGCGGCCCGCCTGGAC 360 ||||||||||| || || ||| |||||||||||| ||| | || | ||| Sbjct 5521 GGGAATGTGGCTCC--TCCGGGAGTGTTATAGCCCTTTACATAATACCCTTCGGC-AGAC 5577 Query 361 TGAGGTCCGCGCTCCGGCTAGGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAAC 420 ||||| ||||||| |||| |||||| |||||||||||| | |||| ||||||||| ||| Sbjct 5578 TGAGGACCGCGCTTCGGCAAGGATGTTGGCGTAATGGTCATCAGCGACCCGTCTTGAAAC 5637 Query 421 ACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATG 480 ||||||||||||||| | | | ||||||||||||||||||| |||||| |||||||||| Sbjct 5638 ACGGACCAAGGAGTCAACCTTATATGCGAGTGTTTGGGTGTTAAACCCCAGCGCGTAATG 5697 Query 481 AAAGTGAACGGAGGTGGGAACCCGTGAGGGTGCACCATCGACCGATCCTGATGTCTTCGG 540 || ||||||| ||||| || | || ||| ||||||||||| ||||||| |||| Sbjct 5698 AACGTGAACGTAGGTGAGA----GCTTCGGCGCATCATCGACCGATTCTGATGTTCTCGG 5753 Query 541 ATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATA 600 ||||||||||||||||||||| | | |||||||||||| |||||||||||| || ||| Sbjct 5754 ATGGATTTGAGTAAGAGCATATAGGGTTGGACCCGAAAGAAGGTGAACTATGCTTGTATA 5813 Query 601 GGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATC 660 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 5814 GGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATC 5873 Query 661 GTCAAATTTGGGTATAGGGGCGA 683 ||||||| || | || ||||||| Sbjct 5874 GTCAAATATGAGCATGGGGGCGA 5896 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079992256550