Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20savannae_20[genbank_20GCA_5F001483325.1_202015-12-30] 361 sequences; 28,542,441 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq26 304 1e-77 seq185 181 8e-41 >seq26 Length=269500 Score = 304 bits (336), Expect = 1e-77 Identities = 1210/1882 (64%), Gaps = 58/1882 (3%) Strand=Plus/Minus Query 65078 TCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGTC 65137 || || ||||||||||| | | |||||| |||| ||| | ||||||||||| || ||| Sbjct 168104 TCAACAGTGAACTGGATAGGAGCAGCAGCGGCCTGGGTACGCAGATAGTACATACCCGTC 168045 Query 65138 TTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGC--ATAATTCGGCT 65195 ||||| ||| |||| | || ||||| | || |||| |||| ||| || || | Sbjct 168044 TTGAGACCAAGCTTCCAACCCGCAAAGTGCAT-GCTGGTAATCTTGCCCATAGTTGGG-T 167987 Query 65196 CGGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCA 65255 | || || || |||||||||||| |||||| || | |||||| || ||||||| Sbjct 167986 CCTTCATGTGAATGTTCAACGACTGAGACTGATCAATAAAGGCACCACGGTCAGCAGCCA 167927 Query 65256 TGTCAATGATACGACGTCCCGATATCTCCCAGACGGTCTTGTACAGGCGACGT-ACCTCA 65314 | | || | | ||| || |||||||| || ||||||||||| ||| | | || Sbjct 167926 TCTGAACAACAGTACGCTGAGAAATCTCCCAAACAGTCTTGTACAGA-GACTTGATGTCC 167868 Query 65315 ATTGGAATCTCCTCAATGTCCTGGACTGAACCACGACGTGC--AATAATGCGATTACGCA 65372 ||||| ||||| ||||| ||||| | || | ||| ||||| || || Sbjct 167867 GCCGGAATACTGGGAATGTTCTGGATAGAACC--GTTGTCCGAAATGATGCGGTTCTTCA 167810 Query 65373 TCGACTCTGACCACAAACCCAAATCGATAAGATGTTGAACCAAGTGACGATTGATGACTT 65432 | || ||||||| ||| | || | ||| | ||| ||| | | |||| || | Sbjct 167809 TGTTGTCCGACCACAGACCAAGGTCAACAAGGTCGCGAAGCAACCAAGGGTTGACAACCT 167750 Query 65433 GGAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGATT 65492 ||||||| || | || ||||| || || ||||| || ||| || || ||| | | Sbjct 167749 GGAACTCACCAGCCAACACACGGCGCTGGTAAATGTTCGAAGTGTAAGGCTCGAAGCACT 167690 Query 65493 CAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGAGT 65552 | |||| || ||||| |||| ||| || ||||| |||||||| || | | || |||| Sbjct 167689 CGTTGTTACCCAGAATCTGGGAAGTTGACGCAGTGGGCATGGGCGCCAGGAGCAGCGAGT 167630 Query 65553 TTCGCAATCCGTTCATTTCAATGTTGTGACGCAATTCGTCCCAGTTCCACATCGGTTTAT 65612 | || | |||||| | ||| | | || || ||| | ||||| ||| | Sbjct 167629 TGCGAACACCGTTCTGCTTAATCTGCTCCTTCAGAGAGTTCCAATCCCACA--GGTCACT 167572 Query 65613 CGTCG--ACATCCACGGGCCACATATCCTGTTGCAGGGTTCCGATACTGGCCGGTGAACC 65670 | || |||||| ||||| || || ||| | || | | | || || || Sbjct 167571 GGGCGTGACATCC------CACATGTCGAACTGAAGGATACCCTGAGAGACAGGAGAGCC 167518 Query 65671 GAGGAAACTATCGTACACTCCCTCCTCCTTGGCAAGTTGACAGCTGGTCTCGAGTGCGGC 65730 | | | ||| || || | || | | || | ||| || || || Sbjct 167517 CTCGTACGTCGAGTAAGTACCTTCAACAGCAGCGATATCGCATGAAGCCTCCAGAGCAGC 167458 Query 65731 AAAATAAATGGTCTCGAAAATGCGTCGATTAAGTTCACGTGCCTCATCGCTCTCGTACGG 65790 |||||||||||||| || | || || | ||| ||||| | ||| | || Sbjct 167457 GTGGTAAATGGTCTCGAAGATCTGCTTGTTGAGCTGACGAGCCTCGGCAGACTCAAAAGG 167398 Query 65791 CATACCCATCAGGACA--AAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACGA 65848 ||| | | || || || | ||||||||||| || || |||| ||| |||||||| Sbjct 167397 CATGCGAAG--GGCCAGGAAGGCATCGGCCAGACCCTGGACACCAACACCAATGGGACGG 167340 Query 65849 TGACGCAAATTGGAACGTCTCGCCTCAGGTACAGGGTAGTAATTGATATCGATAATGCGA 65908 ||||||| ||| | ||||| |||||||||| || | ||| || || || Sbjct 167339 TGACGCATGTTGCTGTTCCGGGCCTCGACAACAGGGTAGTGGTTCACATCAATGATACGG 167280 Query 65909 TTCAAATTGCGTGTCACCACATGCACGATA-CGTCGCAATTGTTCGAAATCAAAATGTTT 65967 ||||| ||||| || || | || | ||| ||| | | ||| || | || Sbjct 167279 TTCAAGTTGCGGACAACAACCTTGGTGACATCGT-GCAGCTTCTGGAAGTCGTAGCAGTT 167221 Query 65968 AGGACGATCGGGAGTGCCGGACACCACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCA 66027 | | || || | || ||||| || || ||||| || || | |||||| Sbjct 167220 -----GTT--GGTGTA---GTCA--ACAAAGGCAGGGAGAGCAAGCGACGCCAAGTTGCA 167173 Query 66028 GACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCG 66087 ||||| | ||| ||||||||| ||||||| ||| || ||||| || || | ||| Sbjct 167172 CACAGCCACCTCATCAGGAGCGCAGTACTCGATAATCTCAGTGCAAAGGTTGGAACTGCG 167113 Query 66088 TATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTA 66147 || || |||| |||| || ||||||||||| ||||| ||||||||||| |||| | Sbjct 167112 AATAGTTCCCAGGTTCTTCTGGTTACTCTTGCGGTTGCAGTGATCCTTGTACAACATGAA 167053 Query 66148 CGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCAC 66207 || | || ||||| || | || | || || | ||| || | ||||| | Sbjct 167052 AGGGTTACCAGTCTCCGTCTGAGCTTCCAGAATAGCATACCACAGCTTCTGAGCCTTGAT 166993 Query 66208 CGTACGTACCGCC-CTACCTTTGCGTTCGTAATGTTCGTAGAGGTGTTCGAAGGATTCAC 66266 ||| | || ||| | |||| || ||||| | |||| || || || |||| Sbjct 166992 GGTAAG-ACGGCCACGTCCTTCCCGCTCGTACTTGACGTAAAGAGCCTCAAATTCCTCAC 166934 Query 66267 CCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAATCACCATCCT 66326 | | || | || | || |||| || || ||||| || | ||| || || | || Sbjct 166933 CGTAACAATCAGCCAAGCCAGGGCACTCGTTGGGGCACATGAGGGTCCATTCGCCGTTCT 166874 Query 66327 GTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTC 66386 || ||||| ||| || | ||| || ||||| ||||| ||| | |||||| || | Sbjct 166873 TCTCAACACGCTTCATGAACAAATCGGGGATCCACAGGGCAAGGAACAAATCGCGAGCGC 166814 Query 66387 GTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCC 66446 | |||||| | ||||| || || || | ||| ||||||||||| | || || |||| Sbjct 166813 GAATCTCCTCCTTACCGTGGTTCTTCCGGAGGTCAAGGAACTCAAACACATCAGCGTGCC 166754 Query 66447 ATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGC 66506 | || |||||||| ||||| || | || ||| ||| ||||| || |||||||| | Sbjct 166753 ACGGCTCCAGGTAAATGGCAAAAGCACCAGGACGCTTGTTACCACCCTGATCGACGTAAC 166694 Query 66507 GAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGC 66566 |||| || ||||||||||||| ||| || || | ||||| || | || ||||||| Sbjct 166693 GAGCAGTGTTATTGAAGACACGCAGCATAGGAACAATACCGTTCGAGGTACCGTTGGTGC 166634 Query 66567 CGTCGATGGGGGATCCTCGTGCCCGTATATCGTGAACATTCAGACCAATACCACCGGCCG 66626 || | || ||| || || || ||| |||| | || ||||| |||||||| ||| Sbjct 166633 CGGCAATATAGGAACCGGTAGCACGGATACGGTGAGCGTTGAGACCGATACCACCCGCCA 166574 Query 66627 TCTTCGAGATGGCAGCACAATCGGCC---ACTGTCCGGAATATGCCGTCAATGGAGTCAC 66683 |||| ||||| |||||| || | | || | || || || || ||| Sbjct 166573 TCTTGGAGATCATAGCACA---GGTCTTGAGGGTATCATAGATACCTTCGATACTGTCCT 166517 Query 66684 CCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGTGTGGCGGCCGAGAAGA 66743 |||| ||| | | | |||| ||| ||| || || | || || |||| ||||| Sbjct 166516 CCTTCATGTCTACCAAGAAGCAGGAAGAAAGCTGAGGCTGAGGGGTACCGGCGTTGAAGA 166457 Query 66744 GGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGACATGTAATTGTACGTCTCGATGACAG 66803 |||| || | ||||| || ||| | | || |||||| |||||| || || | ||| Sbjct 166456 GGGTAGGAGAGGCGTGAGTGAAGAACTTGCTCGACATGAGATTGTAAGTTTCCAGAACAC 166397 Query 66804 CATCAATGTTTTCGCCATGAATCCCGAGTGCACATCGCATCAGGAGGTATTGAGGCCGTT 66863 |||| || || || || |||| ||| ||||| | | || ||||| || | Sbjct 166396 GCTCAACATTATCACCCCAGATACCGACAGCAACACGCATAATCATGTGCTGAGGACGCT 166337 Query 66864 CGACCAGC---CGATC---CTTGATATGCATTAAGTAGGAGCGTTCCAGGGTCTTGATAC 66917 |||| | | | ||| ||||| | | ||| || | |||||||||||||| | Sbjct 166336 CGACAATCTTGCCATCAAGCTTGAGA------AGGTAAGATCTTTCCAGGGTCTTGAATC 166283 Query 66918 CAAAGTACGAGTAATTGAAATC 66939 |||||||| || ||||| || Sbjct 166282 CAAAGTACTGATAGTTGAAGTC 166261 >seq185 Length=20677 Score = 181 bits (200), Expect = 8e-41 Identities = 593/915 (65%), Gaps = 20/915 (2%) Strand=Plus/Minus Query 61027 GAACCCCTATTGCAAGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGAT 61086 |||||||| | || || || || || ||||| | ||||| ||| |||| | || Sbjct 17611 GAACCCCTCCTTCAGGATAACCCCAACCGCTTCGTGCTCTTCCCTATCAAGTACCACGAG 17552 Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146 || |||| |||||||||||||| || || || |||||||| | |||||| | || | Sbjct 17551 ATCTGGCAAATGTACAAAAAGGCCGAGGCCTCTTTCTGGACCGCCGAGGAGATTGACCTT 17492 Query 61147 TCCAAAGACATGAATGACTGG---GAGCGTTTATCGAGCGGTGAACAACATTTCATTAAA 61203 ||||| || | | |||||| | || | | | | |||||| ||||| Sbjct 17491 TCCAAGGATCTTCACGACTGGAACAACCGCATGACTAAGGATGAACAGTTCTTCATCTCT 17432 Query 61204 CATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGT 61263 || || | || ||||| ||||| || |||||||| || || ||||| || | || ||| Sbjct 17431 CACGTTCTTGCCTTCTTCGCCGCCTCTGACGGTATTGTTAACGAGAACTTGGTCGAGCGT 17372 Query 61264 TTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATG 61323 ||| | ||||| || | | || || ||||| |||||||| |||||||| ||| Sbjct 17371 TTCTCTGCTGAGGTTCAGATCCCTGAAGCCCGTTGCTTCTACGGTTTCCAGATCATGATG 17312 Query 61324 GAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCG 61383 ||||| | |||||||||| |||| | | || || || || ||||| | ||||| || Sbjct 17311 GAGAACATTCACTCGGAGACGTACTCTTTGCTGATTGACACCTACATTAAGGAGCCTGCT 17252 Query 61384 GAACGTGAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGAT 61443 | || | | ||||| ||||| || || || || | || || || || Sbjct 17251 CAGCGCACATACCTCTTCAACGCCATTGACACTATTCCCTGCATTCGCCGCAAGGCCGAC 17192 Query 61444 TGGGCCTTCAATTGGATCACCAGTACAA--CGGCTACATTTGGTGAACGATTGCTGGCAT 61501 |||||| | || ||||| || |||| | | || |||| | | || | | || | Sbjct 17191 TGGGCCCTGAAGTGGATTAC--TGACAAGGAGTCGACTTTTGCTCAGCGTCTTGTTGCCT 17134 Query 61502 TTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGA 61561 | || | || |||||| | || ||| ||| | |||||| | ||||| ||| || | Sbjct 17133 TCGCCGCTGTTGAGGGTATCTTCTTCTCTGGTGCTTTTGCCTCCATCTTCTGGCTGCGCA 17074 Query 61562 AACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCA 61621 | ||||| | ||||||||| |||| ||| ||| ||| | || || || || ||||| Sbjct 17073 AGCGTGGTTTGATGCCCGGTTTGACTTTCTCCAACGAGCTTATCTCTCGTGATGAGGGTC 17014 Query 61622 TGCATTGTGATTTTG-CTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAG 61680 | || ||||||| ||| || || || || || |||| | ||| | || Sbjct 17013 TTCACACGGATTTTGCCTGCCTT-CTTTT------CTCTCACCTGAA-CAACCGCCCCAG 16962 Query 61681 GAGCGTGTGGGT----GAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGAC 61736 | || | | || || | ||| || || || || |||| || || || Sbjct 16961 CAAGCAGTTGATCCAGGACATCATCACTGATGCCGTCGTCATTGAGAAGGAGTTCCTTAC 16902 Query 61737 TGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGA 61796 || ||| | ||| | | || |||| ||||| || || ||| | ||||| || Sbjct 16901 CGAGGCTCTTCCCTGCGCTCTTCTCGGTATGAACGCTGACCTCATGAAGACCTATATCGA 16842 Query 61797 ATTTGTTGCCGACCGTCTGTTGGTCGATTTGGGTATGAAGCGGATCTATAATACGAAAAA 61856 || || ||||||||||| |||||| | | |||| | | | || || | || Sbjct 16841 GTTCGTCGCCGACCGTCTTCTGGTCGCTCTCGGTAACGACAAGGTATACAAGGCCTCCAA 16782 Query 61857 CCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACG 61916 ||| || || |||||||| | || || || | ||| ||||| || || |||||||| || Sbjct 16781 CCCCTTCGACTTCATGGAGAACATCTCCCTTGGTGGAAAGACCAACTTCTTCGAGAAGCG 16722 Query 61917 TGTAGGCGACTATCA 61931 ||| || || || || Sbjct 16721 TGTTGGTGATTACCA 16707 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397566250825040