Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20savannae_20[genbank_20GCA_5F001483325.1_202015-12-30] 361 sequences; 28,542,441 total letters Query= NC_032108.1 Length=589068 Score E Sequences producing significant alignments: (Bits) Value seq90 111 6e-19 seq30 86.0 2e-11 >seq90 Length=107489 Score = 111 bits (122), Expect = 6e-19 Identities = 216/317 (68%), Gaps = 4/317 (1%) Strand=Plus/Minus Query 12731 AGAACATCGTAAAAGAAAACTTTCATGCCTAGACACTCTGCTAGGACAGAGACCTGAGAA 12790 ||||||||||| ||| || |||||||| | | ||| || ||||| || | ||| | | Sbjct 47797 AGAACATCGTAGTAGATGACGTTCATGCCCATAGCCTCAGCGAGGACGGAAAGCTGGGCA 47738 Query 12791 CCAATGTTACCATAACCTACTATACCTAGGGTCTTTCCTCTAACTTCACGGCAACCTTG- 12849 ||||||| || ||||| | ||||| |||||||| || | | || | ||| |||| Sbjct 47737 CCAATGTGGCCGTAACCGATGATACCAAGGGTCTTGCCACGGATCTCCCAGCA--CTTGT 47680 Query 12850 -AGAAGTCTTGTTCCAAATGCCTTGGTGTAGTTCTTTGTTTCTATCTCCAACCTGACGAG 12908 ||| ||||||||| | || |||| | || | | || |||| ||| |||| Sbjct 47679 TGGAAACCTTGTTCCAGGTACCACGGTGCATCTCAAGGGAACGGTCACCAAGCTGGCGAG 47620 Query 12909 AAAGATTAATTAGTTGTCCTATGATGAGCTCTGCCACGCTTCTAGTGTTGCAAAAGGGAG 12968 ||| ||| | | || |||| ||||| || ||| | || |||| |||||||| Sbjct 47619 CCAGAGAAATGATCTCACCGATGACAAGCTCGGCAACGGAACGAGAGTTGGCAAAGGGAG 47560 Query 12969 AATTAAAGACTGCAATGCCTAGTTTGGTAGCCATGTCTAGATTAACCTGATCGTAACCAA 13028 | || ||||| ||||| || | |||| || || || | ||||| | | ||||| Sbjct 47559 AGTTGAAGACGGCAATACCGCGCTTGGCGGCGTATTCGAGGTCGACCTGGTTGGTACCAA 47500 Query 13029 TGCAGAAGCATCCTATG 13045 |||||||||| || ||| Sbjct 47499 TGCAGAAGCAACCGATG 47483 >seq30 Length=259318 Score = 86.0 bits (94), Expect = 2e-11 Identities = 108/146 (74%), Gaps = 2/146 (1%) Strand=Plus/Minus Query 364425 CAATAGTCATACGAGAGGGAATGGAGAGAGGGTTGATGATGATGTCAGGCACCATGCCGT 364484 |||| ||||||||||| ||||||| | | ||||| |||||||| || || || || | Sbjct 164819 CAATGGTCATACGAGAAGGAATGGCGTGGGGGTTAATGATGATATCTGGAGTAATACCCT 164760 Query 364485 CAGCGGTAAAGGGCATATCTTC-GGGAGGAACGATGAGACCAATGGTTCCCTTTTGCGCA 364543 || ||||| |||||||| || | | | | | | ||||||||| ||||| || | Sbjct 164759 CACGAGTAAAAGGCATATCCTCTTGTCTGTAAG-TAACACCAATGGTGCCCTTCTGTCCG 164701 Query 364544 TAGCGAGAAGCAAACTTGTCGCCAAT 364569 | || |||||||||||||| ||||| Sbjct 164700 TGACGGGAAGCAAACTTGTCACCAAT 164675 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1884877681811373