Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20fraxineus_20[genbank_20GCA_5F001414365.1_202015-10- 27] 4,749 sequences; 51,524,987 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq163 255 9e-66 seq4367 75.2 2e-11 >seq163 Length=14151 Score = 255 bits (282), Expect = 9e-66 Identities = 176/198 (89%), Gaps = 1/198 (1%) Strand=Plus/Minus Query 61 ACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC 120 ||||||||||||||||||||||||| |||| || ||| ||||||||||||||||| | || Sbjct 10897 ACCTGTTATTGCCTCAAACTTCCATCGGCTTGA-GCCGATAGTCCCTCTAAGAAGACGGC 10839 Query 121 CACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTA 180 |||| ||| || | ||||||||||||||||||||||||||||||||| ||||| Sbjct 10838 GACCAGCCAAAGCTAGCCTGTCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGCAATTA 10779 Query 181 ACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGA 240 | ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| Sbjct 10778 AGCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCACAAAATCAAGA 10719 Query 241 AAGAGCTATCAATCTGTC 258 ||||||| |||||||||| Sbjct 10718 AAGAGCTCTCAATCTGTC 10701 Score = 102 bits (112), Expect = 1e-19 Identities = 58/59 (98%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 60 ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 11353 ACTCGTTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 11295 >seq4367 Length=23331 Score = 75.2 bits (82), Expect = 2e-11 Identities = 46/49 (94%), Gaps = 0/49 (0%) Strand=Plus/Plus Query 175 GAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCAC 223 ||||||| |||||||||| | |||||||||||||||||||||||||||| Sbjct 10249 GAATTAAGCAGACAAATCGCACCACCAACTAAGAACGGCCATGCACCAC 10297 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796763342469