Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20fraxineus_20[genbank_20GCA_5F001414365.1_202015-10- 27] 4,749 sequences; 51,524,987 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq163 430 4e-118 seq4181 250 8e-64 >seq163 Length=14151 Score = 430 bits (476), Expect = 4e-118 Identities = 243/246 (99%), Gaps = 0/246 (0%) Strand=Plus/Minus Query 298 AGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGA 357 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1094 AGGGTCTTCTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGA 1035 Query 358 TAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGA 417 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1034 TAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGA 975 Query 418 CGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGT 477 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 974 CGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGT 915 Query 478 TGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCAC 537 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 914 TGAATTACTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACACCAC 855 Query 538 TTTCTG 543 |||||| Sbjct 854 TTTCTG 849 Score = 378 bits (418), Expect = 2e-102 Identities = 261/292 (89%), Gaps = 5/292 (2%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1685 CTTTTGTTCTACTGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 1626 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1625 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCAACCCGGATC 1566 Query 127 GGCCCGCGAAGGACCTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCATTGA 186 |||||||||||||||||| || |||| ||| | ||| |||||||||||| ||||| Sbjct 1565 AGCCCGCGAAGGACCTTAATGCTAGAAGTTGGGCTTTGACACCCAGTTCCGCTTTATTGA 1506 Query 187 TTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTA 246 ||||||||||||| |||| |||||||||||||||| |||||||| |||||||| || Sbjct 1505 ATAAGTAAAAAAACTATAAAGGTAGTGGTATTTCACCGGCGCCGAA---GCTCCCACCTA 1449 Query 247 TTCTACA-CCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAAC 297 ||||||| ||||| | ||| |||||||| ||| |||||||||||||||||| Sbjct 1448 TTCTACACCCTCT-ATGTCTTTTCACAATGTCAAACTAGAGTCAAGCTCAAC 1398 >seq4181 Length=28076 Score = 250 bits (276), Expect = 8e-64 Identities = 188/222 (85%), Gaps = 22/222 (10%) Strand=Plus/Minus Query 302 TCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTG-----TGGTTTCGCTAG 356 |||||||||||||||||||| || | |||||||||||||||| |||||||||||| Sbjct 6324 TCTTCTTTCCCCGCTGATTCTGCTGAACCCGTTCCCTTGGCTGCAGTATGGTTTCGCTAG 6265 Query 357 ATAGTAGATA--------GGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTA 408 |||||||||| ||||||| ||||||||||| ||||||||||| ||||||||| Sbjct 6264 ATAGTAGATATATATATAGGGACAGCAGGAATCTCGTTCATCCATTCATGAGCGTCACTA 6205 Query 409 ----ATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTAC-----TCCCGC 459 | ||||||| ||||||||||||||||||||||||||||||||||| |||||| Sbjct 6204 GGTAAATAGATGAAGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACATTACTCCCGC 6145 Query 460 CGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCA 501 |||||||||||||||||||||||| |||||||||||| |||| Sbjct 6144 CGTTTACCCGCGCTTGGTTGAATTACTTCACTTTGACCTTCA 6103 Score = 84.2 bits (92), Expect = 7e-14 Identities = 48/49 (98%), Gaps = 0/49 (0%) Strand=Plus/Minus Query 495 ACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCACTTTCTG 543 ||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 6035 ACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACACCACTTTCTG 5987 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635122344352