Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20fraxineus_20[genbank_20GCA_5F001414365.1_202015-10-
27] 4,749 sequences; 51,524,987 total letters
Query= AAMG01002199.1
Length=543
Score E
Sequences producing significant alignments: (Bits) Value
seq163 430 4e-118
seq4181 250 8e-64
>seq163
Length=14151
Score = 430 bits (476), Expect = 4e-118
Identities = 243/246 (99%), Gaps = 0/246 (0%)
Strand=Plus/Minus
Query 298 AGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGA 357
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1094 AGGGTCTTCTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGA 1035
Query 358 TAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGA 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1034 TAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGA 975
Query 418 CGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGT 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 974 CGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGT 915
Query 478 TGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCAC 537
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 914 TGAATTACTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACACCAC 855
Query 538 TTTCTG 543
||||||
Sbjct 854 TTTCTG 849
Score = 378 bits (418), Expect = 2e-102
Identities = 261/292 (89%), Gaps = 5/292 (2%)
Strand=Plus/Minus
Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1685 CTTTTGTTCTACTGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 1626
Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1625 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCAACCCGGATC 1566
Query 127 GGCCCGCGAAGGACCTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCATTGA 186
|||||||||||||||||| || |||| ||| | ||| |||||||||||| |||||
Sbjct 1565 AGCCCGCGAAGGACCTTAATGCTAGAAGTTGGGCTTTGACACCCAGTTCCGCTTTATTGA 1506
Query 187 TTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTA 246
||||||||||||| |||| |||||||||||||||| |||||||| |||||||| ||
Sbjct 1505 ATAAGTAAAAAAACTATAAAGGTAGTGGTATTTCACCGGCGCCGAA---GCTCCCACCTA 1449
Query 247 TTCTACA-CCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAAC 297
||||||| ||||| | ||| |||||||| ||| ||||||||||||||||||
Sbjct 1448 TTCTACACCCTCT-ATGTCTTTTCACAATGTCAAACTAGAGTCAAGCTCAAC 1398
>seq4181
Length=28076
Score = 250 bits (276), Expect = 8e-64
Identities = 188/222 (85%), Gaps = 22/222 (10%)
Strand=Plus/Minus
Query 302 TCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTG-----TGGTTTCGCTAG 356
|||||||||||||||||||| || | |||||||||||||||| ||||||||||||
Sbjct 6324 TCTTCTTTCCCCGCTGATTCTGCTGAACCCGTTCCCTTGGCTGCAGTATGGTTTCGCTAG 6265
Query 357 ATAGTAGATA--------GGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTA 408
|||||||||| ||||||| ||||||||||| ||||||||||| |||||||||
Sbjct 6264 ATAGTAGATATATATATAGGGACAGCAGGAATCTCGTTCATCCATTCATGAGCGTCACTA 6205
Query 409 ----ATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTAC-----TCCCGC 459
| ||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 6204 GGTAAATAGATGAAGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACATTACTCCCGC 6145
Query 460 CGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCA 501
|||||||||||||||||||||||| |||||||||||| ||||
Sbjct 6144 CGTTTACCCGCGCTTGGTTGAATTACTTCACTTTGACCTTCA 6103
Score = 84.2 bits (92), Expect = 7e-14
Identities = 48/49 (98%), Gaps = 0/49 (0%)
Strand=Plus/Minus
Query 495 ACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCACTTTCTG 543
||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 6035 ACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACACCACTTTCTG 5987
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1635122344352
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |