Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20fraxineus_20[genbank_20GCA_5F001414365.1_202015-10- 27] 4,749 sequences; 51,524,987 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq4538 264 9e-66 seq678 114 1e-20 >seq4538 Length=19519 Score = 264 bits (292), Expect = 9e-66 Identities = 749/1138 (66%), Gaps = 22/1138 (2%) Strand=Plus/Minus Query 65807 AAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACGATGACGCAAATTGGAACGT 65866 |||| || || ||||||||||| |||| | | || || | ||||| |||||| | Sbjct 7813 AAAGCATCAGCAAGACCTTGAACACCAAGAGCAATTGGTCTGTGACGGAAATTGCTCTTT 7754 Query 65867 CTCGCCTCAGGTACAGGGTAGTAATTGATATCGATAATGCGATTCAAATTGCGTGTCACC 65926 || || || || || |||||||| |||||||| ||||| |||||| || | || || | Sbjct 7753 CTTGCTTCTGGAACTGGGTAGTAGTTGATATCAATAATCTTATTCAAGTT-CTTGACAAC 7695 Query 65927 ACATGCACGATACGTCGCAATTGTTC--GAAATCAAAATGTTTAGGACGATCGGGAGTGC 65984 | | | | || ||| | ||| ||| ||| || || | || || | | Sbjct 7694 AACTTGGC-AGACCTCGTGAAGCTTCTGGAAGTCATAA-GT----GGCGGTCTT---TTC 7644 Query 65985 CGGACACCACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAG 66044 | ||| | | ||||| ||||| ||||| | ||||| || || | || || | Sbjct 7643 ATCA----ACATATGTTGGAAGAGCAAGTGATGCCAAATTGCAAACGGCGACTTCATCTG 7588 Query 66045 GAGCGGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCT 66104 | || ||||| ||||| || |||||||| || || || ||||| || | |||| Sbjct 7587 GTGCACAGTACTCAACAATCTCCGTGCACAGGTTGGAGCTTCGGATGGTACCAAGGTTCT 7528 Query 66105 GTTGATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAA 66164 || || ||||| || ||||| ||||||||||| | |||| | || | |||||||| Sbjct 7527 TCTGGTTGCTCTTTCGGTTGCAGGCATCCTTGTAGAGCATGAAAGGGTTTCCGGTCTCGG 7468 Query 66165 CTTGGGACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACCGTACGTACCGCCCTAC 66224 || | || | || | || |||||| | ||||| || || | ||| |||| Sbjct 7467 TCTGAGCTTCGAGAATAGAGTACCAAAGCTTTTGAGCCTTGACAGT-CTTACGGCCCATG 7409 Query 66225 CTTTGCGT-TCGTAATGTTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGA 66283 | | | ||||| | || || | || || ||||| | || || | || | Sbjct 7408 TTCTCAGCCTCGTATTTCTCATACAAAGCCTCAAACTCATCACCGTAAACGTCAGCCAAA 7349 Query 66284 CATGGACACTTGTGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATA 66343 | ||||||| || || ||||||| | ||| ||| | || ||| ||||| ||| Sbjct 7348 CCAGGACACTCGTTAGGGCACATCAATGTCCAGTCAAGGTTCTTTTCAACACGCTTCATG 7289 Query 66344 AATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCG 66403 |||| ||| || ||||| || || ||||| ||||| || || || ||| || | ||| Sbjct 7288 AATAAATCTGGAATCCAAAGAGCATAGAAAAGATCACGGGCGCGGACCTCTTCCTTTCCG 7229 Query 66404 TGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATG 66463 || || || || | ||| ||||||||||||| || || |||||||| || ||||||||| Sbjct 7228 TGGTTCTTTCGGAGGTCAAGGAACTCAAAGACATCAGCGTGCCATGGCTCAAGGTAGATG 7169 Query 66464 GCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAG 66523 || || | || ||| ||| ||||| || || || || | ||| |||||||| Sbjct 7168 GCAAAAGCACCAGGACGCTTGTTACCACCCTGATCAACATATCTGGCGGTGTTGTTGAAA 7109 Query 66524 ACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCT 66583 || || | ||| || || | ||||| || || || || || || | ||| || ||| Sbjct 7108 ACTCGAAGCATAGGAACAATTCCGTTGGAGTTTCCGTTTGTACCAGCAATGTAGGCTCCA 7049 Query 66584 CGTGCCCGTATATCGTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCA 66643 || || || ||| ||||| ||||| |||||||| || |||| || || ||| Sbjct 7048 GTGGCACGGATTCTGTGGACATTAAGACCGATACCACCAGCGTTCTTAGAAATCATAGCG 6989 Query 66644 CAA-TCGGC-CACTGTCCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGT 66701 ||| || | | |||| |||| || |||||| ||| |||| ||| | |||| Sbjct 6988 CAAGTCTTCAAAGTGTCATAAATA--CCATCAATGCTGTCCTCCTTCATGTCGATGAGGA 6931 Query 66702 AGCATGAACTAAGTTGGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCG 66761 | ||||| ||||| | || || || | || | || || || || | ||||| | Sbjct 6930 AACATGATGAGAGTTGTGCTTGTGGAGTACCAGCAGCAAAAAGTGTTGGAGAGGCGTGGG 6871 Query 66762 TAAAGTAATGGCGAGACATGTAATTGTACGTCTCGATGACAGCATCAATGTTTTCGCCAT 66821 ||||||| | || ||||| | ||||| ||||| ||| |||| ||||| || || || | Sbjct 6870 TAAAGTATTTGCTGGACATCAAGTTGTAGGTCTCAATGGCAGCCTCAATATTATCACCGT 6811 Query 66822 GAATCCCGAGTGCACATCGCATCAGGAGGTATTGAGGCCGTTCGACCAGCCGATCCTTGA 66881 |||| || | ||| ||||| | | | ||| || |||||| | | | | || Sbjct 6810 GAATACCAACAGCAACACGCATAATCATATGTTGTGGACGTTCGCAAATCTTGCCATCGA 6751 Query 66882 TATGCATTAAGTAGGAGCGTTCCAGGGTCTTGATACCAAAGTACGAGTAATTGAAATC 66939 | | | | || || || || |||||||||| || ||||| ||| |||||||| Sbjct 6750 GACGGAGGAGATATGATCGCTCGAGGGTCTTGAATCCGAAGTATTGGTAGTTGAAATC 6693 >seq678 Length=9679 Score = 114 bits (126), Expect = 1e-20 Identities = 150/206 (73%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 61434 GAAAGCGGATTGGGCCTTCAATTGGATCACCAGTACAACGG--CTACATTTGGTGAACGA 61491 ||| || |||||||| | ||||||| ||| |||| | |||| |||| | |||| Sbjct 7931 GAAGGCCGATTGGGCTGTTCGTTGGATC--CAGGACAAGGAGTCTACCTTTGCTCAACGT 7988 Query 61492 TTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTT 61551 | | || ||||| | || |||||| | || || ||||| || || || | |||||| Sbjct 7989 CTTGTTGCCTTTGCTGCTGTTGAGGGTATCTTCTTTAGTGGCTCTTTCGCATCCATCTTT 8048 Query 61552 TGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGC 61611 ||||||||||| ||||| |||||| | ||||| || ||| ||| |||||||| || || Sbjct 8049 TGGTTGAAGAAGCGTGGTCTTATGGCTGGTCTTACTTTCTCCAACGAGTTGATCTCCCGT 8108 Query 61612 GACGAGGGCATGCATTGTGATTTTGC 61637 |||||||| | || |||||||| Sbjct 8109 GACGAGGGTCTCCACACCGATTTTGC 8134 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397544989385360