Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20fructigenus_20[genbank_20GCA_5F001414455.1_202015- 10-27] 504 sequences; 61,124,938 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq192 471 8e-131 seq503 205 2e-50 >seq192 Length=9579 Score = 471 bits (522), Expect = 8e-131 Identities = 293/314 (93%), Gaps = 0/314 (0%) Strand=Plus/Minus Query 5 TGGTCCGGCCGGGCCTTTCCTTCTGGGGATCCGCATGCCCTTCACTGGGTGTGCCGGGGA 64 ||||||| |||||||||||||||| |||| || |||||||||||||||||||| ||||| Sbjct 2041 TGGTCCGACCGGGCCTTTCCTTCTAGGGAACCCCATGCCCTTCACTGGGTGTGTGGGGGA 1982 Query 65 GCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACAT 124 | ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1981 ACTAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTATGCTCGAATACAT 1922 Query 125 TAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGT 184 |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1921 TAGCATGGAATAATGAAATAGGACGTGTGGTTCTATTTTGTTGGTTTCTAGGACCGCCGT 1862 Query 185 AATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGG 244 ||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| Sbjct 1861 AATGATTAATAGGGATAGTCGGGGGCATCAGTATTCCGTTGTCAGAGGTGAAATTCTTGG 1802 Query 245 ATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGA 304 ||||| |||||||||||||||||||||| || |||||||||||||||||||||||||| Sbjct 1801 ATTTACGGAAGACTAACTACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCAGTGA 1742 Query 305 ACGAAAGTTAGGGG 318 |||||||||||||| Sbjct 1741 ACGAAAGTTAGGGG 1728 >seq503 Length=220590 Score = 205 bits (226), Expect = 2e-50 Identities = 168/202 (83%), Gaps = 3/202 (1%) Strand=Plus/Minus Query 119 ATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGAC 178 ||||||| ||||||||||||| || || || | ||||||||| ||| ||||| |||| Sbjct 179306 ATACATTGGCATGGAATAATAAAAACAGAAGTT-GATTCTATTTTATTGCTTTCTTGGAC 179248 Query 179 CGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAAT 238 ||||||||||||||||||||||| ||||||| ||||||||| || ||||||||||||| Sbjct 179247 CGCCGTAATGATTAATAGGGATAATCGGGGGCATCAGTATTCTGTTATCAGAGGTGAAAT 179188 Query 239 TCTTGGATTTATTGAAGACTAACTACTGCGAAAGC--GTTCACCAAGGATGTTTTCATTA 296 |||| ||| | |||||| | ||||| ||||||| || ||| ||| | ||||||||| Sbjct 179187 TCTTAAATTCACAGAAGACAAGCTACTACGAAAGCATTTTTACCCAGGTTATTTTCATTA 179128 Query 297 ATCAGTGAACGAAAGTTAGGGG 318 |||||||||| ||||||||||| Sbjct 179127 ATCAGTGAACAAAAGTTAGGGG 179106 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915195387392