Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20fructigenus_20[genbank_20GCA_5F001414455.1_202015- 10-27] 504 sequences; 61,124,938 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq192 619 4e-175 seq503 125 2e-26 seq467 87.8 6e-15 seq476 78.8 3e-12 >seq192 Length=9579 Score = 619 bits (686), Expect = 4e-175 Identities = 401/436 (92%), Gaps = 5/436 (1%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 6921 CTTTTGTTCTACTGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 6980 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 6981 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCAACCCGGATC 7040 Query 127 GGCCCGCGAAGGACCTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCATTGA 186 |||||||||||||||||| || |||| ||| | ||| |||||||||||| ||||| Sbjct 7041 AGCCCGCGAAGGACCTTAATGCTAGAAGTTGGGCTTTGACACCCAGTTCCGCTTTATTGA 7100 Query 187 TTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTA 246 ||||||||||||| |||| |||||||||||||||| |||| | |||||||| || Sbjct 7101 ATAAGTAAAAAAACTATAAAGGTAGTGGTATTTCACCGGCGCGTTA---GCTCCCACCTA 7157 Query 247 TTCTACA-CCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTT 305 ||||||| ||||| | ||| |||||||| ||| |||||||||||||||||||||||||| Sbjct 7158 TTCTACACCCTCT-ATGTCTTTTCACAATGTCAAACTAGAGTCAAGCTCAACAGGGTCTT 7216 Query 306 CTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGAT 365 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 7217 CTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGAT 7276 Query 366 AGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCAT 425 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 7277 AGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCAT 7336 Query 426 TTGGCTACCTTAAGAG 441 |||||||||||||||| Sbjct 7337 TTGGCTACCTTAAGAG 7352 Score = 178 bits (196), Expect = 4e-42 Identities = 101/103 (98%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 441 GAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTC 500 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 7666 GAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTACTTCACTTTGACATTC 7725 Query 501 AGAGCACTGGGCAGAAATCACATTGCGTCAACATCACTTTCTG 543 ||||||||||||||||||||||||||||||||| ||||||||| Sbjct 7726 AGAGCACTGGGCAGAAATCACATTGCGTCAACACCACTTTCTG 7768 >seq503 Length=220590 Score = 125 bits (138), Expect = 2e-26 Identities = 81/89 (91%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 ||||||| |||||||||||||||| ||||||||| ||||||||||||| |||||| || Sbjct 161254 CAGGGTCATCTTTCCCCGCTGATTTTGCCAAGCCCATTCCCTTGGCTGTAATTTCGCCAG 161313 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGT 385 |||||||||||||||||||||||| |||| Sbjct 161314 ATAGTAGATAGGGACAGTGGGAATTTCGT 161342 >seq467 Length=335859 Score = 87.8 bits (96), Expect = 6e-15 Identities = 53/56 (95%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 441 GAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGAC 496 ||||||||||||||||||||||||||| | ||||||||||||| |||||||||||| Sbjct 199497 GAGTCATAGTTACTCCCGCCGTTTACCTGTGCTTGGTTGAATTACTTCACTTTGAC 199442 >seq476 Length=308794 Score = 78.8 bits (86), Expect = 3e-12 Identities = 46/48 (96%), Gaps = 0/48 (0%) Strand=Plus/Minus Query 496 CATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCACTTTCTG 543 ||||||||||||||||||| |||||||||||||||||| ||||||||| Sbjct 50760 CATTCAGAGCACTGGGCAGGAATCACATTGCGTCAACACCACTTTCTG 50713 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635191758592