Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20fructigenus_20[genbank_20GCA_5F001414455.1_202015- 10-27] 504 sequences; 61,124,938 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq192 883 0.0 seq503 271 2e-70 >seq192 Length=9579 Score = 883 bits (978), Expect = 0.0 Identities = 498/504 (99%), Gaps = 0/504 (0%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2198 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 2257 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2258 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 2317 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 |||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| Sbjct 2318 TCTCAGGCTCCCTCTCCGGAATAGAACCCTAATTCCCCGTTACCCGTTGAAACCATGGTA 2377 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2378 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCA 2437 Query 241 CAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGT 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 2438 CAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCATTGGT 2497 Query 301 TTTTTATCTAATAAATACACCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCTCTAG 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2498 TTTTTATCTAATAAATACACCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCTCTAG 2557 Query 361 AATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGA 420 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 2558 AATTACCACGGTTATCCAAGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGA 2617 Query 421 GCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTG 480 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 2618 GCCATTCGCAGTTTCACCGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTG 2677 Query 481 AGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||| Sbjct 2678 AGACAAGCATATGACTACTGGCAG 2701 >seq503 Length=220590 Score = 271 bits (300), Expect = 2e-70 Identities = 177/193 (92%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 152 ATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGG 211 ||||||||||||||||||| |||||||||| |||||| ||||||||||||||||||||| Sbjct 142776 ATTCCCCGTTACCCGTTGAAACCATGGTAGACCACTACTCTACCATCGAAAGTTGATAGG 142717 Query 212 GCAGAAATTTGAATGAACCATCGCCGGCTCAAGGCCATGCGATTCGTTAAGTTATTATGA 271 |||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| | Sbjct 142716 GCAGAAATTTGAATGAACCATCGCCGGCCCAAGGCCATGCAATTCGTTAAGTTATTATAA 142657 Query 272 ATCACCAAGGAGCCCCGAAGGGCGTTGGTTTTTTATCTAATAAATACACCCCTTCCGAAG 331 ||||||||||||||||||| || |||| |||||||||||||| |||| ||||||||||| Sbjct 142656 ATCACCAAGGAGCCCCGAA-GGAATTGGCTTTTTATCTAATAAGTACAGCCCTTCCGAAG 142598 Query 332 TCGGGGTTTTTAG 344 |||| |||||| Sbjct 142597 TCGG---TTTTAG 142588 Score = 80.6 bits (88), Expect = 8e-13 Identities = 65/79 (82%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 73 ATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCC 132 ||||| ||||||| ||||||| | ||||| ||||| ||| |||||||||||| ||||| Sbjct 143040 ATTGGATAATTTGTGCGCCTGTTACCTTCTTTGGACCTGGCAGCCGTTTCTCAAACTCCC 142981 Query 133 TCTCCGGAATCGAACCCTA 151 | |||||| |||||||| Sbjct 142980 TTTCCGGAGGAGAACCCTA 142962 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510392387584