Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20fructigenus_20[genbank_20GCA_5F001414455.1_202015-
10-27] 504 sequences; 61,124,938 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq104 315 6e-81
seq476 113 4e-20
>seq104
Length=83277
Score = 315 bits (348), Expect = 6e-81
Identities = 760/1134 (67%), Gaps = 26/1134 (2%)
Strand=Plus/Plus
Query 65813 TCGGCCAGACCTTGAACTCCAATACCGATGGGACGATGACGCAAATTGGAACGTCTCGCC 65872
|| || ||||||||||| || | | | || || | ||||| |||||| ||| |||
Sbjct 47469 TCAGCAAGACCTTGAACACCGAGAGCAATAGGTCTGTGACGGAAATTGCTCTTTCTTGCC 47528
Query 65873 TCAGGTACAGGGTAGTAATTGATATCGATAATGCGATTCAAATTGCGTGTC-ACCACATG 65931
||||| || ||||| || |||| ||||||||| |||||| || | || | || || ||
Sbjct 47529 TCAGGAACTGGGTAATAGTTGACATCGATAATCTTATTCAAGTT-CTTGACGACTACTTG 47587
Query 65932 CACGATA-CGTCGCAATTGTTCGAAATCAAAATGTTTAGGACGATCGGGAGTGCCGGACA 65990
|| ||| | || || ||| ||| || || | | || | | | ||
Sbjct 47588 GCAGACCTCGTGGAGCTT-TTGGAAGTCATAA-GT----GGCAGTC-----TTCTCGTCA 47636
Query 65991 CCACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGG 66050
|| | |||||| | ||||| ||||| | ||||| ||||| | ||| || || ||
Sbjct 47637 ACATATG-TTGGGA-GAGCAAGCGATGCCAAATTGCAAACAGCGACCTCATCTGGTGCAC 47694
Query 66051 TATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGAT 66110
||||||||||| || ||||||| || || || ||||| || | ||||| ||| |
Sbjct 47695 AGTACTCGACAATCTCAGTGCACAAGTTGGAGCTTCGGATGGTACCGAGATTCTTTTGGT 47754
Query 66111 TACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGG 66170
||||||| || ||||| ||||||||||| | |||| | || | ||||||||| || |
Sbjct 47755 TACTCTTTCGGTTGCAAGCATCCTTGTAAAGCATGAAAGGGTTTCCGGTCTCAGTCTGAG 47814
Query 66171 ACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACCGTACGTACCGCCCTACCTTTGC 66230
||||| ||| | || |||||| | || || | | | | | |||| | ||
Sbjct 47815 CCTCAAGGATAGAGTACCAAAGCTTTTGGGCTTTGATGCT-CTTGCGACCCTTGCCTTCA 47873
Query 66231 GT-TCGTAATGTTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGA 66289
| ||||| | || || | ||||| ||||| | || |||| || | |||
Sbjct 47874 GACTCGTATTTCTCATACAAAGCCTCGAACTCGTCACCGTAGACGTCGGCCAATCCAGGA 47933
Query 66290 CACTTGTGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGA 66349
|||| || || ||||||| | ||| ||| | || ||| ||||| ||| || |||
Sbjct 47934 CACTCGTTGGGGCACATCAATGTCCAGTCAAGGTTCTTTTCAACACGCTTCATGAAGAGA 47993
Query 66350 TCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTT 66409
|| || |||||||| |||||||||||||| || || || |||||| | ||||| ||
Sbjct 47994 TCTGGGATCCAGAGAGCGTAGAAGAGATCACGGGCACGAACCTCCTCCTTTCCGTGGTTC 48053
Query 66410 TTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAAC 66469
|| || | || |||||||| || | || || |||||||| || ||||||||||||||
Sbjct 48054 TTTCGGAGATCAAGGAACTCGAAAACATCTGCGTGCCATGGCTCAAGGTAGATGGCGAAA 48113
Query 66470 GAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGC 66529
| || ||| ||| |||||||| || || || | |||| |||||||| || ||
Sbjct 48114 GCACCAGGACGCTTGTTACCACCTTGATCAACATATCTAGCGGTGTTGTTGAAAACTCGA 48173
Query 66530 AACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGT-GC 66588
| ||| || || | ||||| || || || || || || | || | || ||| ||
Sbjct 48174 AGCATGGGAACAATTCCGTTGGAGTTTCCGTTTGTACCCGCAATATAAGCACC-CGTCGC 48232
Query 66589 CCGTATATCGTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAATC 66648
|| || ||||||||| ||||| |||||||| || |||| || || ||||||
Sbjct 48233 ACGGATTCTGTGAACATTGAGACCGATACCACCAGCGTTCTTTGAAATCATGGCACAAAT 48292
Query 66649 GGCCACTGTCCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGA 66708
|| ||| | | || || |||||| ||| |||| ||| | ||| |||| ||
Sbjct 48293 TTTCAATGTGTCGTAGATACCATCAATGCTGTCCTCCTTCATGTCGATAAGGAAGCAGGA 48352
Query 66709 ACTAAGTTGGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTA 66768
|||||| | | ||||| | || | |||||| ||||| | ||||| || |||||
Sbjct 48353 TGAAAGTTGTGCCTGTGGTGTACCAGCTGCGAAGAGTGTGGGGGAGGCGTGGGTGAAGTA 48412
Query 66769 ATGGCGAGACATGTAATTGTACGTCTCGATGACAGCATCAATGTTTTCGCCATGAATCCC 66828
| || ||||| | ||||| ||||||||| |||| || || | ||||| || || ||
Sbjct 48413 TTTGCTGGACATCAAGTTGTAGGTCTCGATGGCAGCCTCGATATCCTCGCCGTGGATTCC 48472
Query 66829 GAGTGCACATCGCATCAGGAGGTATTGAGGCCGTTC---GACCAGCCGATCCTTGATATG 66885
|| ||| ||||| | | | ||| || ||||| || | | ||| || |
Sbjct 48473 GACAGCAACGCGCATAATCATATGTTGTGGACGTTCACAGATCTTGCCATC---GAGGCG 48529
Query 66886 CATTAAGTAGGAGCGTTCCAGGGTCTTGATACCAAAGTACGAGTAATTGAAATC 66939
| | || || || || |||||||||| ||| ||||| ||| ||||||||
Sbjct 48530 GAGGAGATATGATCGCTCGAGGGTCTTGAAACCGAAGTATTGGTAGTTGAAATC 48583
Score = 86.0 bits (94), Expect = 5e-12
Identities = 314/478 (66%), Gaps = 14/478 (3%)
Strand=Plus/Plus
Query 65077 ATCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGT 65136
||| || ||||||||||| | | || ||| | || | ||||||||||| || ||
Sbjct 46739 ATCAACGGTGAACTGGATAGGTGCCGAGGCAGCCATAGTACGGAGATAGTACATTCCAGT 46798
Query 65137 CTTGAGGCC-AGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGC--ATAATTCGG 65193
|||||| || ||| ||| | ||||||||| || | || || | || || ||
Sbjct 46799 CTTGAGACCCAGCTT-CCAGCCTGCGAAATGCATAC-TGGTGATCTTACCCATGGTTGGG 46856
Query 65194 CTCGGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGC 65253
|| || || || |||| || ||| ||||| ||| | |||||| || |||||
Sbjct 46857 -TCCTTCATGTGGATGTTCATTGATTGAGATTGATCAATGAATGCACCACGGTCGGCAGC 46915
Query 65254 CATGTCAATGATACGACGTCCCGATATCTCCCAGACGGTCTTGTACAG-GCGACGTACCT 65312
||| | | ||| |||| || |||||||| ||||||||||| || || | | |
Sbjct 46916 CATCTGGACGATGGTACGTTGTGAGATCTCCCAAACGGTCTTGTAAAGAGCCTTG-ATAT 46974
Query 65313 CAATTGGAATCTCCTCAATGTCCTGGACTGAACCACGACGT--GCAATAATGCGATTACG 65370
|| |||||| | || | |||| ||| |||| ||| ||||| || || ||
Sbjct 46975 CAGCTGGAATATTTGGAACATTTTGGATTGATCCAC--CGTCAGCAATGATACGGTTCTT 47032
Query 65371 CATCGACTCTGACCACAAACCCAAATCGATAAGATGTTGAACCAAGTGA-CGATTGATGA 65429
||| || ||||| | |||| ||| | ||||| | || ||| | | |||| |
Sbjct 47033 CATGTTATCGGACCAGAGTCCCATATCAACAAGATCCTTAA-GAAGCCATGGGTTGACAA 47091
Query 65430 CTTGGAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGG 65489
| |||||||| || | || ||||| || ||| |||||||| || || || |||
Sbjct 47092 CCTGGAACTCTCCAGCAAGGACACGTCGAGAATATATGTTGGAGGTATATGGCTCGAAGC 47151
Query 65490 ATTCAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAA 65547
| || || || ||||| || ||| ||||||||||| |||||||| | |||
Sbjct 47152 ACTCGTTGAAACCAAGAATCTGACTGGTACTGGCAGTTGGCATAGGAGCGACGAGCAA 47209
>seq476
Length=308794
Score = 113 bits (124), Expect = 4e-20
Identities = 139/188 (74%), Gaps = 4/188 (2%)
Strand=Plus/Minus
Query 61434 GAAAGCGGATTGGGCCTTCAATTGGATCACCAGTACAACGG--CTACATTTGGTGAACGA 61491
|||||| |||||||| || |||||| || |||| | |||| |||| | ||||
Sbjct 12581 GAAAGCCGATTGGGCTGTCCGATGGATC--CAAGACAAGGAATCTACCTTTGCTCAACGT 12524
Query 61492 TTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTT 61551
| | || ||||| | || |||||| | || |||||||| || || ||| | |||||
Sbjct 12523 CTTGTTGCCTTTGCTGCTGTTGAGGGTATCTTCTTCAGTGGCTCTTTCGCCTCCATCTTC 12464
Query 61552 TGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGC 61611
||||||||||| ||||| || ||| | ||||| |||||| ||| |||||||| || ||
Sbjct 12463 TGGTTGAAGAAGCGTGGCCTCATGGCTGGTCTTACCTTCTCCAACGAGTTGATCTCCCGT 12404
Query 61612 GACGAGGG 61619
|| |||||
Sbjct 12403 GATGAGGG 12396
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397565557938560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |