Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20fructigenus_20[genbank_20GCA_5F001414455.1_202015- 10-27] 504 sequences; 61,124,938 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq104 315 6e-81 seq476 113 4e-20 >seq104 Length=83277 Score = 315 bits (348), Expect = 6e-81 Identities = 760/1134 (67%), Gaps = 26/1134 (2%) Strand=Plus/Plus Query 65813 TCGGCCAGACCTTGAACTCCAATACCGATGGGACGATGACGCAAATTGGAACGTCTCGCC 65872 || || ||||||||||| || | | | || || | ||||| |||||| ||| ||| Sbjct 47469 TCAGCAAGACCTTGAACACCGAGAGCAATAGGTCTGTGACGGAAATTGCTCTTTCTTGCC 47528 Query 65873 TCAGGTACAGGGTAGTAATTGATATCGATAATGCGATTCAAATTGCGTGTC-ACCACATG 65931 ||||| || ||||| || |||| ||||||||| |||||| || | || | || || || Sbjct 47529 TCAGGAACTGGGTAATAGTTGACATCGATAATCTTATTCAAGTT-CTTGACGACTACTTG 47587 Query 65932 CACGATA-CGTCGCAATTGTTCGAAATCAAAATGTTTAGGACGATCGGGAGTGCCGGACA 65990 || ||| | || || ||| ||| || || | | || | | | || Sbjct 47588 GCAGACCTCGTGGAGCTT-TTGGAAGTCATAA-GT----GGCAGTC-----TTCTCGTCA 47636 Query 65991 CCACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGG 66050 || | |||||| | ||||| ||||| | ||||| ||||| | ||| || || || Sbjct 47637 ACATATG-TTGGGA-GAGCAAGCGATGCCAAATTGCAAACAGCGACCTCATCTGGTGCAC 47694 Query 66051 TATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGAT 66110 ||||||||||| || ||||||| || || || ||||| || | ||||| ||| | Sbjct 47695 AGTACTCGACAATCTCAGTGCACAAGTTGGAGCTTCGGATGGTACCGAGATTCTTTTGGT 47754 Query 66111 TACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGG 66170 ||||||| || ||||| ||||||||||| | |||| | || | ||||||||| || | Sbjct 47755 TACTCTTTCGGTTGCAAGCATCCTTGTAAAGCATGAAAGGGTTTCCGGTCTCAGTCTGAG 47814 Query 66171 ACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACCGTACGTACCGCCCTACCTTTGC 66230 ||||| ||| | || |||||| | || || | | | | | |||| | || Sbjct 47815 CCTCAAGGATAGAGTACCAAAGCTTTTGGGCTTTGATGCT-CTTGCGACCCTTGCCTTCA 47873 Query 66231 GT-TCGTAATGTTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGA 66289 | ||||| | || || | ||||| ||||| | || |||| || | ||| Sbjct 47874 GACTCGTATTTCTCATACAAAGCCTCGAACTCGTCACCGTAGACGTCGGCCAATCCAGGA 47933 Query 66290 CACTTGTGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGA 66349 |||| || || ||||||| | ||| ||| | || ||| ||||| ||| || ||| Sbjct 47934 CACTCGTTGGGGCACATCAATGTCCAGTCAAGGTTCTTTTCAACACGCTTCATGAAGAGA 47993 Query 66350 TCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTT 66409 || || |||||||| |||||||||||||| || || || |||||| | ||||| || Sbjct 47994 TCTGGGATCCAGAGAGCGTAGAAGAGATCACGGGCACGAACCTCCTCCTTTCCGTGGTTC 48053 Query 66410 TTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAAC 66469 || || | || |||||||| || | || || |||||||| || |||||||||||||| Sbjct 48054 TTTCGGAGATCAAGGAACTCGAAAACATCTGCGTGCCATGGCTCAAGGTAGATGGCGAAA 48113 Query 66470 GAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGC 66529 | || ||| ||| |||||||| || || || | |||| |||||||| || || Sbjct 48114 GCACCAGGACGCTTGTTACCACCTTGATCAACATATCTAGCGGTGTTGTTGAAAACTCGA 48173 Query 66530 AACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGT-GC 66588 | ||| || || | ||||| || || || || || || | || | || ||| || Sbjct 48174 AGCATGGGAACAATTCCGTTGGAGTTTCCGTTTGTACCCGCAATATAAGCACC-CGTCGC 48232 Query 66589 CCGTATATCGTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAATC 66648 || || ||||||||| ||||| |||||||| || |||| || || |||||| Sbjct 48233 ACGGATTCTGTGAACATTGAGACCGATACCACCAGCGTTCTTTGAAATCATGGCACAAAT 48292 Query 66649 GGCCACTGTCCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGA 66708 || ||| | | || || |||||| ||| |||| ||| | ||| |||| || Sbjct 48293 TTTCAATGTGTCGTAGATACCATCAATGCTGTCCTCCTTCATGTCGATAAGGAAGCAGGA 48352 Query 66709 ACTAAGTTGGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTA 66768 |||||| | | ||||| | || | |||||| ||||| | ||||| || ||||| Sbjct 48353 TGAAAGTTGTGCCTGTGGTGTACCAGCTGCGAAGAGTGTGGGGGAGGCGTGGGTGAAGTA 48412 Query 66769 ATGGCGAGACATGTAATTGTACGTCTCGATGACAGCATCAATGTTTTCGCCATGAATCCC 66828 | || ||||| | ||||| ||||||||| |||| || || | ||||| || || || Sbjct 48413 TTTGCTGGACATCAAGTTGTAGGTCTCGATGGCAGCCTCGATATCCTCGCCGTGGATTCC 48472 Query 66829 GAGTGCACATCGCATCAGGAGGTATTGAGGCCGTTC---GACCAGCCGATCCTTGATATG 66885 || ||| ||||| | | | ||| || ||||| || | | ||| || | Sbjct 48473 GACAGCAACGCGCATAATCATATGTTGTGGACGTTCACAGATCTTGCCATC---GAGGCG 48529 Query 66886 CATTAAGTAGGAGCGTTCCAGGGTCTTGATACCAAAGTACGAGTAATTGAAATC 66939 | | || || || || |||||||||| ||| ||||| ||| |||||||| Sbjct 48530 GAGGAGATATGATCGCTCGAGGGTCTTGAAACCGAAGTATTGGTAGTTGAAATC 48583 Score = 86.0 bits (94), Expect = 5e-12 Identities = 314/478 (66%), Gaps = 14/478 (3%) Strand=Plus/Plus Query 65077 ATCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGT 65136 ||| || ||||||||||| | | || ||| | || | ||||||||||| || || Sbjct 46739 ATCAACGGTGAACTGGATAGGTGCCGAGGCAGCCATAGTACGGAGATAGTACATTCCAGT 46798 Query 65137 CTTGAGGCC-AGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGC--ATAATTCGG 65193 |||||| || ||| ||| | ||||||||| || | || || | || || || Sbjct 46799 CTTGAGACCCAGCTT-CCAGCCTGCGAAATGCATAC-TGGTGATCTTACCCATGGTTGGG 46856 Query 65194 CTCGGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGC 65253 || || || || |||| || ||| ||||| ||| | |||||| || ||||| Sbjct 46857 -TCCTTCATGTGGATGTTCATTGATTGAGATTGATCAATGAATGCACCACGGTCGGCAGC 46915 Query 65254 CATGTCAATGATACGACGTCCCGATATCTCCCAGACGGTCTTGTACAG-GCGACGTACCT 65312 ||| | | ||| |||| || |||||||| ||||||||||| || || | | | Sbjct 46916 CATCTGGACGATGGTACGTTGTGAGATCTCCCAAACGGTCTTGTAAAGAGCCTTG-ATAT 46974 Query 65313 CAATTGGAATCTCCTCAATGTCCTGGACTGAACCACGACGT--GCAATAATGCGATTACG 65370 || |||||| | || | |||| ||| |||| ||| ||||| || || || Sbjct 46975 CAGCTGGAATATTTGGAACATTTTGGATTGATCCAC--CGTCAGCAATGATACGGTTCTT 47032 Query 65371 CATCGACTCTGACCACAAACCCAAATCGATAAGATGTTGAACCAAGTGA-CGATTGATGA 65429 ||| || ||||| | |||| ||| | ||||| | || ||| | | |||| | Sbjct 47033 CATGTTATCGGACCAGAGTCCCATATCAACAAGATCCTTAA-GAAGCCATGGGTTGACAA 47091 Query 65430 CTTGGAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGG 65489 | |||||||| || | || ||||| || ||| |||||||| || || || ||| Sbjct 47092 CCTGGAACTCTCCAGCAAGGACACGTCGAGAATATATGTTGGAGGTATATGGCTCGAAGC 47151 Query 65490 ATTCAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAA 65547 | || || || ||||| || ||| ||||||||||| |||||||| | ||| Sbjct 47152 ACTCGTTGAAACCAAGAATCTGACTGGTACTGGCAGTTGGCATAGGAGCGACGAGCAA 47209 >seq476 Length=308794 Score = 113 bits (124), Expect = 4e-20 Identities = 139/188 (74%), Gaps = 4/188 (2%) Strand=Plus/Minus Query 61434 GAAAGCGGATTGGGCCTTCAATTGGATCACCAGTACAACGG--CTACATTTGGTGAACGA 61491 |||||| |||||||| || |||||| || |||| | |||| |||| | |||| Sbjct 12581 GAAAGCCGATTGGGCTGTCCGATGGATC--CAAGACAAGGAATCTACCTTTGCTCAACGT 12524 Query 61492 TTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTT 61551 | | || ||||| | || |||||| | || |||||||| || || ||| | ||||| Sbjct 12523 CTTGTTGCCTTTGCTGCTGTTGAGGGTATCTTCTTCAGTGGCTCTTTCGCCTCCATCTTC 12464 Query 61552 TGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGC 61611 ||||||||||| ||||| || ||| | ||||| |||||| ||| |||||||| || || Sbjct 12463 TGGTTGAAGAAGCGTGGCCTCATGGCTGGTCTTACCTTCTCCAACGAGTTGATCTCCCGT 12404 Query 61612 GACGAGGG 61619 || ||||| Sbjct 12403 GATGAGGG 12396 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397565557938560