Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20infarciens_20[genbank_20GCA_5F001414345.1_202015-10-
27] 1,714 sequences; 68,152,485 total letters
Query= AAMG01000278.1
Length=318
Score E
Sequences producing significant alignments: (Bits) Value
seq1379 471 8e-131
seq809 199 7e-49
>seq1379
Length=12095
Score = 471 bits (522), Expect = 8e-131
Identities = 293/314 (93%), Gaps = 0/314 (0%)
Strand=Plus/Minus
Query 5 TGGTCCGGCCGGGCCTTTCCTTCTGGGGATCCGCATGCCCTTCACTGGGTGTGCCGGGGA 64
||||||| |||||||||||||||| |||| || |||||||||||||||||||| |||||
Sbjct 5855 TGGTCCGACCGGGCCTTTCCTTCTAGGGAACCCCATGCCCTTCACTGGGTGTGTGGGGGA 5796
Query 65 GCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACAT 124
| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 5795 ACTAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTATGCTCGAATACAT 5736
Query 125 TAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGT 184
|||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 5735 TAGCATGGAATAATGAAATAGGACGTGTGGTTCTATTTTGTTGGTTTCTAGGACCGCCGT 5676
Query 185 AATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGG 244
||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct 5675 AATGATTAATAGGGATAGTCGGGGGCATCAGTATTCCGTTGTCAGAGGTGAAATTCTTGG 5616
Query 245 ATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGA 304
||||| |||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 5615 ATTTACGGAAGACTAACTACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCAGTGA 5556
Query 305 ACGAAAGTTAGGGG 318
||||||||||||||
Sbjct 5555 ACGAAAGTTAGGGG 5542
>seq809
Length=117299
Score = 199 bits (220), Expect = 7e-49
Identities = 169/205 (82%), Gaps = 6/205 (3%)
Strand=Plus/Plus
Query 119 ATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGAC 178
||| |||||||||| | |||| |||||||||| |||||| | |||| |||||||| ||||
Sbjct 26049 ATATATTAGCATGGGAGAATAAAATAGGACGT-CGGTTCCAATTTGATGGTTTCTCGGAC 26107
Query 179 CGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAAT 238
||| |||||||| || ||| ||||||||||| ||||||||| |||||||| |||| ||
Sbjct 26108 CGCTGTAATGATCAAGAGGCATAGTCGGGGGCATCAGTATTCTGTTGTCAGAAGTGAGAT 26167
Query 239 TCTTG-GATTTATTGAAGACTAA----CTACTGCGAAAGCGTTCACCAAGGATGTTTTCA 293
||||| ||||| ||||||||| |||||| | ||| || ||| |||||||||||
Sbjct 26168 TCTTGTTATTTACGGAAGACTAAATACCTACTGTGGAAGAATTTGCCAGGGATGTTTTCA 26227
Query 294 TTAATCAGTGAACGAAAGTTAGGGG 318
|||||| ||||||||||||| ||||
Sbjct 26228 TTAATCTGTGAACGAAAGTTGGGGG 26252
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 915184313472
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |