Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20infarciens_20[genbank_20GCA_5F001414345.1_202015-10- 27] 1,714 sequences; 68,152,485 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq1379 471 8e-131 seq809 199 7e-49 >seq1379 Length=12095 Score = 471 bits (522), Expect = 8e-131 Identities = 293/314 (93%), Gaps = 0/314 (0%) Strand=Plus/Minus Query 5 TGGTCCGGCCGGGCCTTTCCTTCTGGGGATCCGCATGCCCTTCACTGGGTGTGCCGGGGA 64 ||||||| |||||||||||||||| |||| || |||||||||||||||||||| ||||| Sbjct 5855 TGGTCCGACCGGGCCTTTCCTTCTAGGGAACCCCATGCCCTTCACTGGGTGTGTGGGGGA 5796 Query 65 GCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACAT 124 | ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 5795 ACTAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTATGCTCGAATACAT 5736 Query 125 TAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGT 184 |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| Sbjct 5735 TAGCATGGAATAATGAAATAGGACGTGTGGTTCTATTTTGTTGGTTTCTAGGACCGCCGT 5676 Query 185 AATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGG 244 ||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| Sbjct 5675 AATGATTAATAGGGATAGTCGGGGGCATCAGTATTCCGTTGTCAGAGGTGAAATTCTTGG 5616 Query 245 ATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGA 304 ||||| |||||||||||||||||||||| || |||||||||||||||||||||||||| Sbjct 5615 ATTTACGGAAGACTAACTACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCAGTGA 5556 Query 305 ACGAAAGTTAGGGG 318 |||||||||||||| Sbjct 5555 ACGAAAGTTAGGGG 5542 >seq809 Length=117299 Score = 199 bits (220), Expect = 7e-49 Identities = 169/205 (82%), Gaps = 6/205 (3%) Strand=Plus/Plus Query 119 ATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGAC 178 ||| |||||||||| | |||| |||||||||| |||||| | |||| |||||||| |||| Sbjct 26049 ATATATTAGCATGGGAGAATAAAATAGGACGT-CGGTTCCAATTTGATGGTTTCTCGGAC 26107 Query 179 CGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAAT 238 ||| |||||||| || ||| ||||||||||| ||||||||| |||||||| |||| || Sbjct 26108 CGCTGTAATGATCAAGAGGCATAGTCGGGGGCATCAGTATTCTGTTGTCAGAAGTGAGAT 26167 Query 239 TCTTG-GATTTATTGAAGACTAA----CTACTGCGAAAGCGTTCACCAAGGATGTTTTCA 293 ||||| ||||| ||||||||| |||||| | ||| || ||| ||||||||||| Sbjct 26168 TCTTGTTATTTACGGAAGACTAAATACCTACTGTGGAAGAATTTGCCAGGGATGTTTTCA 26227 Query 294 TTAATCAGTGAACGAAAGTTAGGGG 318 |||||| ||||||||||||| |||| Sbjct 26228 TTAATCTGTGAACGAAAGTTGGGGG 26252 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915184313472