Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20infarciens_20[genbank_20GCA_5F001414345.1_202015-10- 27] 1,714 sequences; 68,152,485 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq1379 917 0.0 seq1494 129 2e-27 >seq1379 Length=12095 Score = 917 bits (1016), Expect = 0.0 Identities = 617/686 (90%), Gaps = 4/686 (1%) Strand=Plus/Minus Query 1 TACGTGACCGGTGGCCTAG--CCGTGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAA 58 || ||||| || ||||| |||||| |||||| ||||||||||||||||||||||||| Sbjct 3291 TATGTGACTGGCGGCCTTCGCCCGTGTAAAGCTCTTTCGACGAGTCGAGTTGTTTGGGAA 3232 Query 59 TGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAG 118 ||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| Sbjct 3231 TGCAGCTCTAAATGGGAGGTATATTTCTTCTAAAGCTAAATATGGGCCAGAGACCGATAG 3172 Query 119 CGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGT 178 |||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct 3171 CGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAACAGTACGT 3112 Query 179 GAAATTGTTGAAAGGGAAGCGCTTGCAACCAGACTTGCCCGCAGTTGCTCAACC-GGCCC 237 ||||||||||||||||||||||||||||||||||||||| || || | ||| || || Sbjct 3111 GAAATTGTTGAAAGGGAAGCGCTTGCAACCAGACTTGCCTGCCGTCGATCATCCCGGGTT 3052 Query 238 CTCGGCCGGTGCACTCTTCTGCGGTCAGGCCAGCATCAGCTCGGGCGGTCGGATAAAGGC 297 ||| | ||||||||| | ||||||||||||||||| | | || || ||| |||||| Sbjct 3051 CTCC-CTGGTGCACTCGGCGGCGGTCAGGCCAGCATCGGTTTCGGTGGCGGGACAAAGGC 2993 Query 298 CCCGGGAATGTGGCCCCCTTCGGGGGGTGTTATAGCCCGGGGTGGAATGCGGCCCGCCTG 357 | ||||| || || || |||||| |||||||||||| || | |||| |||| || | Sbjct 2992 CTTGGGAACGTAGCTCCTCTCGGGGAGTGTTATAGCCCTCGGCGCCATGCCGCCCACCGG 2933 Query 358 GACTGAGGTCCGCGCTCCGGCTAGGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGG 417 ||| |||| ||||||| |||||||||||||||||||||||||||||||| ||||||||| Sbjct 2932 GACCGAGGACCGCGCTTCGGCTAGGATGCTGGCGTAATGGTTGTAAGCGACCCGTCTTGA 2873 Query 418 AACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTA 477 ||||||||||||||||||||||||||||||||||||||||||| ||||||| | |||| | Sbjct 2872 AACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGCCAAACCCATACGCGCA 2813 Query 478 ATGAAAGTGAACGGAGGTGGGAACCCGTGAGGGTGCACCATCGACCGATCCTGATGTCTT 537 || || ||||||||||||| |||||| | |||||||| |||||||||||||||||||||| Sbjct 2812 ATTAACGTGAACGGAGGTGAGAACCCTTCAGGGTGCATCATCGACCGATCCTGATGTCTT 2753 Query 538 CGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGA 597 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 2752 CGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTAA 2693 Query 598 ATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCG 657 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 2692 ATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCG 2633 Query 658 ATCGTCAAATTTGGGTATAGGGGCGA 683 |||||||||||||||||||||||||| Sbjct 2632 ATCGTCAAATTTGGGTATAGGGGCGA 2607 >seq1494 Length=660096 Score = 129 bits (142), Expect = 2e-27 Identities = 96/111 (86%), Gaps = 1/111 (1%) Strand=Plus/Plus Query 477 AATGAAA-GTGAACGGAGGTGGGAACCCGTGAGGGTGCACCATCGACCGATCCTGATGTC 535 || |||| |||||||||||| ||||| | |||||||| |||| |||||||||| ||| Sbjct 67621 AAAGAAACGTGAACGGAGGTAAGAACCAATTAGGGTGCATCATCAACCGATCCTGCTGTA 67680 Query 536 TTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGA 586 ||||||||||||| ||||||||||||||||||||||| | |||||||| || Sbjct 67681 TTCGGATGGATTTAAGTAAGAGCATAGCTGTTGGGACACAAAAGATGGGGA 67731 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079963234700