Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20infarciens_20[genbank_20GCA_5F001414345.1_202015-10-
27] 1,714 sequences; 68,152,485 total letters
Query= AAMG01000636.1
Length=426
Score E
Sequences producing significant alignments: (Bits) Value
seq1054 107 5e-21
>seq1054
Length=43506
Score = 107 bits (118), Expect = 5e-21
Identities = 195/282 (69%), Gaps = 10/282 (4%)
Strand=Plus/Plus
Query 7 TACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCC 66
|| |||| |||| ||||| ||| ||||||||||||| | | ||||||||
Sbjct 38422 TAAACTGTATCTGCACAGTTATTCCAATTTCACTGAGCCAATCATTGAGACAGCTGTTGT 38481
Query 67 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 126
||||||| ||||| |||| | | | | ||| | | || || ||| |||||||||||||
Sbjct 38482 ATCGTTAAATCATTCATGCAAGACCGCATTTAACGGCCAGGGTATTCCGCTACCTTAGGA 38541
Query 127 CCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAA----GAGCTT---CGCGTT 179
|| | || | || ||||||| || | ||||| ||| |||| ||||| ||
Sbjct 38542 CCCTCATAGGTAAGGCCGCCATTGATCGGGGTTTCCTTCAAAACCAAGCTTATATTAGTC 38601
Query 180 AGCTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACT 239
| || | ||| |||||| ||| || ||||||| |||||| | |||| | | |
Sbjct 38602 AACTTAGAAAATCCGTTAACCAGCCGACATCGGGCAGAAATCACACTCAATACTTTGATT 38661
Query 240 T-TCGTGTT--TGCAGAGTGCTGTGTTTTTAATAAACAGTCG 278
| | | || ||||||||||| |||||| | ||||||||||
Sbjct 38662 TATTATCTTACTGCAGAGTGCTTTGTTTTAATTAAACAGTCG 38703
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1260778389888
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |