Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20infarciens_20[genbank_20GCA_5F001414345.1_202015-10- 27] 1,714 sequences; 68,152,485 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq1379 266 3e-69 seq809 113 5e-23 >seq1379 Length=12095 Score = 266 bits (294), Expect = 3e-69 Identities = 173/189 (92%), Gaps = 1/189 (1%) Strand=Plus/Minus Query 1 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATA 60 ||||| ||||||||||||||||||||||||||| ||||||||||||||| |||||||||| Sbjct 5798 GGAACTAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTATGCTCGAATA 5739 Query 61 CATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC 120 ||||| ||||||||||| ||||||||||| ||||||||||||| |||||||||||||| Sbjct 5738 CATTAGCATGGAATAATGAAATAGGACGTGTGGTTCTATTTTGTTGGTTTCTAGGACCG- 5680 Query 121 CCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTC 180 |||||||||| |||| ||||||||||||| ||||||||| |||||| ||||||||||| Sbjct 5679 CCGTAATGATTAATAGGGATAGTCGGGGGCATCAGTATTCCGTTGTCAGAGGTGAAATTC 5620 Query 181 TTGGATTTA 189 ||||||||| Sbjct 5619 TTGGATTTA 5611 >seq809 Length=117299 Score = 113 bits (124), Expect = 5e-23 Identities = 102/126 (81%), Gaps = 2/126 (2%) Strand=Plus/Plus Query 58 ATACATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGAC 117 ||| |||| ||||| | |||| |||||||||| |||||| | |||| ||||||| |||| Sbjct 26049 ATATATTAGCATGGGAGAATAAAATAGGACGT-CGGTTCCAATTTGATGGTTTCTCGGAC 26107 Query 118 CGCCCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAA 177 ||| |||||||| || | | ||||||||||| ||||||||| |||||| | |||| | Sbjct 26108 CGCT-GTAATGATCAAGAGGCATAGTCGGGGGCATCAGTATTCTGTTGTCAGAAGTGAGA 26166 Query 178 TTCTTG 183 |||||| Sbjct 26167 TTCTTG 26172 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511991498560