Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20infarciens_20[genbank_20GCA_5F001414345.1_202015-10- 27] 1,714 sequences; 68,152,485 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq1379 715 0.0 seq202 107 6e-21 seq908 96.9 1e-17 >seq1379 Length=12095 Score = 715 bits (792), Expect = 0.0 Identities = 455/491 (93%), Gaps = 5/491 (1%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 791 CTTTTGTTCTACTGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 850 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 851 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCAACCCGGATC 910 Query 127 GGCCCGCGAAGGACCTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCATTGA 186 |||||||||||||||||| || |||| ||| | ||| |||||||||||| ||||| Sbjct 911 AGCCCGCGAAGGACCTTAATGCTAGAAGTTGGGCTTTGACACCCAGTTCCGCTTTATTGA 970 Query 187 TTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTA 246 ||||||||||||| |||| |||||||||||||||| |||| | |||||||| || Sbjct 971 ATAAGTAAAAAAACTATAAAGGTAGTGGTATTTCACCGGCGCGTTA---GCTCCCACCTA 1027 Query 247 TTCTACA-CCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTT 305 ||||||| ||||| | ||| |||||||| ||| |||||||||||||||||||||||||| Sbjct 1028 TTCTACACCCTCT-ATGTCTTTTCACAATGTCAAACTAGAGTCAAGCTCAACAGGGTCTT 1086 Query 306 CTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGAT 365 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1087 CTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGAT 1146 Query 366 AGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCAT 425 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1147 AGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCAT 1206 Query 426 TTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTC 485 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1207 TTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTAC 1266 Query 486 TTCACTTTGAC 496 ||||||||||| Sbjct 1267 TTCACTTTGAC 1277 Score = 84.2 bits (92), Expect = 7e-14 Identities = 48/49 (98%), Gaps = 0/49 (0%) Strand=Plus/Plus Query 495 ACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCACTTTCTG 543 ||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1332 ACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACACCACTTTCTG 1380 >seq202 Length=163416 Score = 107 bits (118), Expect = 6e-21 Identities = 86/102 (84%), Gaps = 4/102 (4%) Strand=Plus/Plus Query 442 AGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACA-TTC 500 |||||||||||||||| |||| | || |||||||| || ||||||||| ||| ||| Sbjct 100174 AGTCATAGTTACTCCCACCGTCTT---GCACTTGGTTGGTTTACTTCACTTTAACAATTC 100230 Query 501 AGAGCACTGGGCAGAAATCACATTGCGTCAACATCACTTTCT 542 ||||||| |||||||||||||||| ||| |||| |||||||| Sbjct 100231 AGAGCACCGGGCAGAAATCACATTCCGTGAACACCACTTTCT 100272 >seq908 Length=77775 Score = 96.9 bits (106), Expect = 1e-17 Identities = 55/56 (98%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 441 GAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGAC 496 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 23936 GAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTACTTCACTTTGAC 23881 Score = 80.6 bits (88), Expect = 9e-13 Identities = 47/49 (96%), Gaps = 0/49 (0%) Strand=Plus/Minus Query 495 ACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCACTTTCTG 543 ||||||||||||||||||||||||||||||||||||||| | ||||||| Sbjct 23790 ACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACACCTCTTTCTG 23742 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635171972672