Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20infarciens_20[genbank_20GCA_5F001414345.1_202015-10-
27] 1,714 sequences; 68,152,485 total letters
Query= AAMG01002199.1
Length=543
Score E
Sequences producing significant alignments: (Bits) Value
seq1379 715 0.0
seq202 107 6e-21
seq908 96.9 1e-17
>seq1379
Length=12095
Score = 715 bits (792), Expect = 0.0
Identities = 455/491 (93%), Gaps = 5/491 (1%)
Strand=Plus/Plus
Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 791 CTTTTGTTCTACTGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 850
Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 851 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCAACCCGGATC 910
Query 127 GGCCCGCGAAGGACCTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCATTGA 186
|||||||||||||||||| || |||| ||| | ||| |||||||||||| |||||
Sbjct 911 AGCCCGCGAAGGACCTTAATGCTAGAAGTTGGGCTTTGACACCCAGTTCCGCTTTATTGA 970
Query 187 TTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTA 246
||||||||||||| |||| |||||||||||||||| |||| | |||||||| ||
Sbjct 971 ATAAGTAAAAAAACTATAAAGGTAGTGGTATTTCACCGGCGCGTTA---GCTCCCACCTA 1027
Query 247 TTCTACA-CCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTT 305
||||||| ||||| | ||| |||||||| ||| ||||||||||||||||||||||||||
Sbjct 1028 TTCTACACCCTCT-ATGTCTTTTCACAATGTCAAACTAGAGTCAAGCTCAACAGGGTCTT 1086
Query 306 CTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGAT 365
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1087 CTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGAT 1146
Query 366 AGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCAT 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1147 AGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCAT 1206
Query 426 TTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTC 485
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1207 TTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTAC 1266
Query 486 TTCACTTTGAC 496
|||||||||||
Sbjct 1267 TTCACTTTGAC 1277
Score = 84.2 bits (92), Expect = 7e-14
Identities = 48/49 (98%), Gaps = 0/49 (0%)
Strand=Plus/Plus
Query 495 ACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCACTTTCTG 543
||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1332 ACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACACCACTTTCTG 1380
>seq202
Length=163416
Score = 107 bits (118), Expect = 6e-21
Identities = 86/102 (84%), Gaps = 4/102 (4%)
Strand=Plus/Plus
Query 442 AGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACA-TTC 500
|||||||||||||||| |||| | || |||||||| || ||||||||| ||| |||
Sbjct 100174 AGTCATAGTTACTCCCACCGTCTT---GCACTTGGTTGGTTTACTTCACTTTAACAATTC 100230
Query 501 AGAGCACTGGGCAGAAATCACATTGCGTCAACATCACTTTCT 542
||||||| |||||||||||||||| ||| |||| ||||||||
Sbjct 100231 AGAGCACCGGGCAGAAATCACATTCCGTGAACACCACTTTCT 100272
>seq908
Length=77775
Score = 96.9 bits (106), Expect = 1e-17
Identities = 55/56 (98%), Gaps = 0/56 (0%)
Strand=Plus/Minus
Query 441 GAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGAC 496
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 23936 GAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTACTTCACTTTGAC 23881
Score = 80.6 bits (88), Expect = 9e-13
Identities = 47/49 (96%), Gaps = 0/49 (0%)
Strand=Plus/Minus
Query 495 ACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCACTTTCTG 543
||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 23790 ACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACACCTCTTTCTG 23742
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1635171972672
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |