Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20infarciens_20[genbank_20GCA_5F001414345.1_202015-10- 27] 1,714 sequences; 68,152,485 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq520 255 1e-65 seq1379 205 2e-50 >seq520 Length=1238 Score = 255 bits (282), Expect = 1e-65 Identities = 215/260 (83%), Gaps = 3/260 (1%) Strand=Plus/Plus Query 20 ATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTG 79 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 7 ATTCAGA-TAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTG 65 Query 80 CTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCAGAACGGGGTGATTCTCTCC 139 |||||| ||||||||||||||||||||||||||||||||||||||| || ||| | ||| Sbjct 66 CTGGATAATGGCTGAACGCCTCTAAGTCAGAATCCATGCCAGAACGCGGCGATCTTGTCC 125 Query 140 TGCACATCGTAGTCGGATACGAATAGGCTTC-GGCCCCGAACCTTAGCAGGCCGGCAACG 198 |||||||||||||||||||||||||| | ||||| | | |||||| || |||| ||| Sbjct 126 CACACATCGTAGTCGGATACGAATAGGCCCCTGGCCCTGCATCTTAGCTGGTCGGCGACG 185 Query 199 GGCGTCCCGCGGAAGCGCGGGGCGCTCAGCTGGCGGATTGCAATTTCACCATGCGCAGGG 258 ||| ||||| ||| | ||||| || ||||||||| |||||||| || Sbjct 186 CTATCACCGTGGAAG-TCGGTGGTAGTAGCTGACGTCTTGCAATTTTACCATGCGTGGGA 244 Query 259 ATAAATCCTTTGCAGACGAC 278 ||| | |||||| ||||| Sbjct 245 ATAGGACATTTGCATACGAC 264 >seq1379 Length=12095 Score = 205 bits (226), Expect = 2e-50 Identities = 126/132 (95%), Gaps = 2/132 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| || |||||| ||||||||||||||||||||||||||||||||| Sbjct 139 GTACGAGAGGAACCGCTGA-TTCAGA-TAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 82 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 81 GCCGCGAAGCTACCATCTGCTGGATAATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 22 Query 121 GAACGGGGTGAT 132 ||||| || ||| Sbjct 21 GAACGCGGCGAT 10 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 819186397696